BLASTX nr result

ID: Coptis24_contig00022203 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022203
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308832.1| predicted protein [Populus trichocarpa] gi|2...   140   8e-32
emb|CAN76433.1| hypothetical protein VITISV_033850 [Vitis vinifera]   132   2e-29
ref|XP_002870268.1| hypothetical protein ARALYDRAFT_915332 [Arab...   122   4e-26
ref|NP_193233.5| fanconi anemia group D2 protein [Arabidopsis th...   117   1e-24
gb|EEC81533.1| hypothetical protein OsI_24939 [Oryza sativa Indi...   110   1e-22

>ref|XP_002308832.1| predicted protein [Populus trichocarpa] gi|222854808|gb|EEE92355.1|
           predicted protein [Populus trichocarpa]
          Length = 1476

 Score =  140 bits (354), Expect = 8e-32
 Identities = 62/98 (63%), Positives = 81/98 (82%)
 Frame = +2

Query: 2   THLSSSQKTNCEESLELLRMSLDSCKSCPLPLIMFYDELIALLERKRLQPAIIDWIGRHV 181
           T  S SQK+NCEE+LELLR SLDSCK   LPL++FYDEL  ++  K+LQP I++W+G+H 
Sbjct: 601 TGASPSQKSNCEEALELLRTSLDSCKQLCLPLVLFYDELTTIMLHKKLQPEIVEWVGKHA 660

Query: 182 GDFESIFLSDLEGGKLVSKESFCGLEGESWINLDGDLS 295
           G+FES FLSDL+GG+L  ++S+CGLEGE W+NLDGD+S
Sbjct: 661 GEFESKFLSDLQGGQLPGEDSYCGLEGELWMNLDGDIS 698


>emb|CAN76433.1| hypothetical protein VITISV_033850 [Vitis vinifera]
          Length = 1201

 Score =  132 bits (333), Expect = 2e-29
 Identities = 60/93 (64%), Positives = 78/93 (83%)
 Frame = +2

Query: 17  SQKTNCEESLELLRMSLDSCKSCPLPLIMFYDELIALLERKRLQPAIIDWIGRHVGDFES 196
           SQ+ N  E+LELL+ SLDSCK  P+PLI+FYDEL+ +L+ + +QPAI+DWIG+HVG+FES
Sbjct: 479 SQQANSAEALELLKTSLDSCKQFPIPLILFYDELVTMLDCRTVQPAIVDWIGKHVGEFES 538

Query: 197 IFLSDLEGGKLVSKESFCGLEGESWINLDGDLS 295
           +FLSDLEGG+L  K+  CGLEGE  +NLDGD+S
Sbjct: 539 MFLSDLEGGQLSVKDLHCGLEGELMMNLDGDIS 571


>ref|XP_002870268.1| hypothetical protein ARALYDRAFT_915332 [Arabidopsis lyrata subsp.
           lyrata] gi|297316104|gb|EFH46527.1| hypothetical protein
           ARALYDRAFT_915332 [Arabidopsis lyrata subsp. lyrata]
          Length = 1385

 Score =  122 bits (305), Expect = 4e-26
 Identities = 55/95 (57%), Positives = 74/95 (77%)
 Frame = +2

Query: 11  SSSQKTNCEESLELLRMSLDSCKSCPLPLIMFYDELIALLERKRLQPAIIDWIGRHVGDF 190
           SSSQ ++C E LELL+ S+DSC+   L LIMFYDE   +L +K LQP I++WIG+H+G+F
Sbjct: 541 SSSQVSDCGEILELLKTSVDSCRQSNLALIMFYDEFATILSQKLLQPEIMEWIGKHLGEF 600

Query: 191 ESIFLSDLEGGKLVSKESFCGLEGESWINLDGDLS 295
           ES+FL+DLE GK+  K S+ GLEG+ W+NLDG +S
Sbjct: 601 ESLFLADLENGKMADKGSYSGLEGDLWMNLDGSIS 635


>ref|NP_193233.5| fanconi anemia group D2 protein [Arabidopsis thaliana]
           gi|332658132|gb|AEE83532.1| fanconi anemia group D2
           protein [Arabidopsis thaliana]
          Length = 1489

 Score =  117 bits (292), Expect = 1e-24
 Identities = 53/95 (55%), Positives = 72/95 (75%)
 Frame = +2

Query: 11  SSSQKTNCEESLELLRMSLDSCKSCPLPLIMFYDELIALLERKRLQPAIIDWIGRHVGDF 190
           SSSQ ++C E LELL+ S++SC+   L LIMFYDE   +L  K LQP I++WIG+H+G+F
Sbjct: 582 SSSQVSDCGEILELLKTSVESCRQSNLALIMFYDEFATILSHKLLQPEIMEWIGKHLGEF 641

Query: 191 ESIFLSDLEGGKLVSKESFCGLEGESWINLDGDLS 295
           ES+FL+DLE  K+  K S+ GLEG+ W+NLDG +S
Sbjct: 642 ESLFLADLENEKMAEKGSYSGLEGDLWMNLDGSIS 676


>gb|EEC81533.1| hypothetical protein OsI_24939 [Oryza sativa Indica Group]
           gi|222636453|gb|EEE66585.1| hypothetical protein
           OsJ_23134 [Oryza sativa Japonica Group]
          Length = 1489

 Score =  110 bits (275), Expect = 1e-22
 Identities = 50/95 (52%), Positives = 72/95 (75%)
 Frame = +2

Query: 11  SSSQKTNCEESLELLRMSLDSCKSCPLPLIMFYDELIALLERKRLQPAIIDWIGRHVGDF 190
           SSSQ+ N +E+LELL+M+++SCK   LPLI+ YDEL  LLE   L  AI++W+G HV +F
Sbjct: 575 SSSQQPNYDEALELLKMAVNSCKFVMLPLILLYDELAVLLENSSLHSAIVEWVGEHVAEF 634

Query: 191 ESIFLSDLEGGKLVSKESFCGLEGESWINLDGDLS 295
           +++FL+DL+ G+L  K    G+EGE W+NLDG++S
Sbjct: 635 DTVFLADLDDGELSKKYVCDGIEGELWMNLDGNIS 669


Top