BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022194
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    86   3e-15
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...    86   3e-15
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    84   1e-14
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    81   1e-13
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...    81   1e-13

>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 44/78 (56%), Positives = 51/78 (65%)
 Frame = -1

Query: 240 KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYPINK 61
           K FF T  + PS N T I +IPKITNP  +S +RPI+LCN  YK+ISK L NRLK  +N 
Sbjct: 628 KKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNS 687

Query: 60  IVSPFQGAFIKGSRIGVN 7
           IVS  Q AFI G  I  N
Sbjct: 688 IVSDSQAAFIPGRIINDN 705


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 44/78 (56%), Positives = 51/78 (65%)
 Frame = -1

Query: 240  KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYPINK 61
            K FF T  + PS N T I +IPKITNP  +S +RPI+LCN  YK+ISK L NRLK  +N 
Sbjct: 854  KKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNS 913

Query: 60   IVSPFQGAFIKGSRIGVN 7
            IVS  Q AFI G  I  N
Sbjct: 914  IVSDSQAAFIPGRIINDN 931


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/76 (52%), Positives = 52/76 (68%)
 Frame = -1

Query: 234 FFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYPINKIV 55
           FF TG +   +N+T I +IPK+  P+   +FRPISLCN  YKIISKI+ANRLK  +  IV
Sbjct: 487 FFTTGYILQEWNQTNICLIPKVERPEQACQFRPISLCNVIYKIISKIIANRLKPILKSIV 546

Query: 54  SPFQGAFIKGSRIGVN 7
           +P+Q AF+ G  I  N
Sbjct: 547 TPYQNAFVPGRLISDN 562


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/78 (52%), Positives = 51/78 (65%)
 Frame = -1

Query: 240  KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYPINK 61
            K+FF T  +  S N T I +IPKITNP+ +S +RPI+LCN  YKIISK L  RLK  ++ 
Sbjct: 854  KIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDA 913

Query: 60   IVSPFQGAFIKGSRIGVN 7
            IVS  Q AFI G  +  N
Sbjct: 914  IVSDSQAAFIPGRLVNDN 931


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/78 (52%), Positives = 51/78 (65%)
 Frame = -1

Query: 240  KVFFITGILNPSFNETFIAIIPKITNPDHISKFRPISLCNFCYKIISKILANRLKYPINK 61
            K+FF T  +  S N T I +IPKITNP+ +S +RPI+LCN  YKIISK L  RLK  ++ 
Sbjct: 834  KIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDA 893

Query: 60   IVSPFQGAFIKGSRIGVN 7
            IVS  Q AFI G  +  N
Sbjct: 894  IVSDSQAAFIPGRLVNDN 911