BLASTX nr result

ID: Coptis24_contig00022177 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022177
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524522.1| protein with unknown function [Ricinus commu...    91   2e-16
ref|XP_002283379.1| PREDICTED: uncharacterized protein LOC100267...    89   5e-16
emb|CAN60929.1| hypothetical protein VITISV_008358 [Vitis vinifera]    89   5e-16
gb|ABR17433.1| unknown [Picea sitchensis]                              88   1e-15
ref|XP_002298910.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14

>ref|XP_002524522.1| protein with unknown function [Ricinus communis]
           gi|223536196|gb|EEF37849.1| protein with unknown
           function [Ricinus communis]
          Length = 299

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
 Frame = -1

Query: 576 LFGCPSVTKKSAFAAKRLRSYFNIRETMVCRPCKLNNVCEFANHIV-GKKADEMNVGDLM 400
           LFGCPS+ KK+ F+AKRLR Y  I+E +VC  C L + C+F N  V       +N+  LM
Sbjct: 200 LFGCPSLAKKNVFSAKRLRKYLEIQEDIVCNKCVLRHSCKFVNQSVWNSDYKTLNLVVLM 259

Query: 399 RSLTSYGFGLTHSNLIVPDEIKDSVSNLLKQVVTHSQ 289
           R +T Y   L H +L VPDEIK SV  LLK+++  SQ
Sbjct: 260 RVITLYALELAHPDLPVPDEIKGSVRRLLKEILKLSQ 296


>ref|XP_002283379.1| PREDICTED: uncharacterized protein LOC100267416 [Vitis vinifera]
           gi|302142872|emb|CBI20167.3| unnamed protein product
           [Vitis vinifera]
          Length = 330

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
 Frame = -1

Query: 576 LFGCPSVTKKSAFAAKRLRSYFNIRETMVCRPCKLNNVCEFANHIVGK-KADEMNVGDLM 400
           LFGCPS+++KS FAAKRLR++F I+E +VC  C L   C+F N  V K     +N+  +M
Sbjct: 231 LFGCPSLSRKSVFAAKRLRTFFRIQEELVCSKCVLKQSCKFVNQSVWKGDTKSLNLSVVM 290

Query: 399 RSLTSYGFGLTHSNLIVPDEIKDSVSNLLKQVVTHSQ 289
           R LT Y        L++PDE+K SV  LLK+V+  S+
Sbjct: 291 RLLTLYAMESMPPQLVLPDEVKASVGRLLKEVLRLSE 327


>emb|CAN60929.1| hypothetical protein VITISV_008358 [Vitis vinifera]
          Length = 330

 Score = 89.0 bits (219), Expect = 5e-16
 Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
 Frame = -1

Query: 576 LFGCPSVTKKSAFAAKRLRSYFNIRETMVCRPCKLNNVCEFANHIVGK-KADEMNVGDLM 400
           LFGCPS+++KS FAAKRLR++F I+E +VC  C L   C+F N  V K     +N+  +M
Sbjct: 231 LFGCPSLSRKSVFAAKRLRTFFRIQEELVCSKCVLKQSCKFVNQSVWKGDTKSLNLSVVM 290

Query: 399 RSLTSYGFGLTHSNLIVPDEIKDSVSNLLKQVVTHSQ 289
           R LT Y        L++PDE+K SV  LLK+V+  S+
Sbjct: 291 RLLTLYAMESMPPQLVLPDEVKASVGRLLKEVLRLSE 327


>gb|ABR17433.1| unknown [Picea sitchensis]
          Length = 514

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 43/95 (45%), Positives = 58/95 (61%)
 Frame = -1

Query: 576 LFGCPSVTKKSAFAAKRLRSYFNIRETMVCRPCKLNNVCEFANHIVGKKADEMNVGDLMR 397
           LFGCPS+ KK  FAAKRLRS+FNI +   CRPC L + C  A      K   +   D++R
Sbjct: 407 LFGCPSLEKKDVFAAKRLRSFFNIEQGTACRPCNLKDTCS-APFAKVSKVKSLTAEDVVR 465

Query: 396 SLTSYGFGLTHSNLIVPDEIKDSVSNLLKQVVTHS 292
            L ++G     + L +PD++K SV NLLK++V  S
Sbjct: 466 LLCTFGLNAEKNELSIPDDVKQSVVNLLKELVDFS 500


>ref|XP_002298910.1| predicted protein [Populus trichocarpa] gi|222846168|gb|EEE83715.1|
           predicted protein [Populus trichocarpa]
          Length = 203

 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
 Frame = -1

Query: 576 LFGCPSVTKKSAFAAKRLRSYFNIRETMVCRPCKLNNVCEFANHIVGK-KADEMNVGDLM 400
           LFGCP++ +KS F+AKRLR++F I+E  VC  C L + C F N  V +     +N+  +M
Sbjct: 101 LFGCPTLMRKSVFSAKRLRNFFEIQEATVCNKCVLKHSCNFVNQSVWRGDIKTLNLAVVM 160

Query: 399 RSLTSYGFGLTHSNLIVPDEIKDSVSNLLKQVVTHSQ 289
           R +T Y     H  L VP+EIK SV+ LL +++  SQ
Sbjct: 161 RVITLYALEAVHPELSVPNEIKASVNRLLTEILKLSQ 197


Top