BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022076
         (977 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK49306.1| unknown [Lotus japonicus]                               66   1e-08
gb|AFK43171.1| unknown [Lotus japonicus]                               65   2e-08
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...    65   3e-08
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...    65   3e-08
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...    64   4e-08

>gb|AFK49306.1| unknown [Lotus japonicus]
          Length = 144

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 5/160 (3%)
 Frame = -2

Query: 733 VLCECTFIVTELAP----VRDNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLL 566
           +L +  F V +L P    + + VTRI AR + +  D  + L++N E Y L +G KF LLL
Sbjct: 4   ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERF--DMFMHLDINSELYPLKVGQKFALLL 61

Query: 565 TPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKLSVIPSPDTGDTYPFRRGDAEVF 386
            P  NP+G P TGY   G       +FEY M G L K+    S  +G      R  AE+ 
Sbjct: 62  VPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKI----SEGSG------REKAEL- 110

Query: 385 GEACFGTLYDEGLVMKMKNIKSR-NVLWEGQSLSLLIKKV 269
               FG     GL+M MK   S  N     Q L LL++KV
Sbjct: 111 -NISFG-----GLLMMMKGDHSHCNKFELDQRLYLLMRKV 144


>gb|AFK43171.1| unknown [Lotus japonicus]
          Length = 139

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 4/99 (4%)
 Frame = -2

Query: 733 VLCECTFIVTELAP----VRDNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLL 566
           +L +  F V +L P    + + VTRI AR + +  D  + L++N E Y L +G KF LLL
Sbjct: 4   ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERF--DMFMHLDINSELYPLKVGQKFALLL 61

Query: 565 TPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKLS 449
            P  NP+G P TGY   G       +FEY M G L K+S
Sbjct: 62  VPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKIS 100


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = -2

Query: 730 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 560
           L E TF+VT L P     D V+R+ AR +    D  +QL++  + Y +  G+KF +++ P
Sbjct: 5   LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62

Query: 559 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKLSVIPSPDTGDTYPFRRGDAEVFGE 380
             N +G P TGY    G      ++EY M G L K+S        DT   +    E++  
Sbjct: 63  TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113

Query: 379 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 269
           A FG     GL+M ++   S    +E  Q L LLI+KV
Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score = 64.7 bits (156), Expect = 3e-08
 Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
 Frame = -2

Query: 730 LCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLELNPETYSLDIGDKFTLLLTP 560
           L E TF+VT L P     D V+R+ AR +    D  +QL++  + Y +  G+KF +++ P
Sbjct: 5   LFEDTFVVTRLDPDGKKFDRVSRVEARSEQL--DMYMQLDVATDVYPMHAGEKFNMVIAP 62

Query: 559 IPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKLSVIPSPDTGDTYPFRRGDAEVFGE 380
             N +G P TGY    G      ++EY M G L K+S        DT   +    E++  
Sbjct: 63  TLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKIS-------EDTSSSQNAKVEMY-- 113

Query: 379 ACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 269
           A FG     GL+M ++   S    +E  Q L LLI+KV
Sbjct: 114 ASFG-----GLLMLLRGDPSTAASFELDQRLFLLIRKV 146


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 61/178 (34%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
 Frame = -2

Query: 790 PPSDDRKNFAEHPCRVNNMVLCECTFIVTELAPVR---DNVTRIYARGQGYHPDTLLQLE 620
           PP   RK   EH        L E  F VT L P     D V+RI AR + +  D  +QL+
Sbjct: 244 PPPPPRK-MVEH--------LFEDIFTVTRLDPDGKKFDRVSRIEARSEQF--DMYMQLD 292

Query: 619 LNPETYSLDIGDKFTLLLTPIPNPNGAPHTGYEAYGGSYFSRYDFEYEMSGILSKLSVIP 440
           +  E Y +  GD+FT++L P  N +G P TG+    G       F+Y M G L K+S   
Sbjct: 293 VATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKIS--- 349

Query: 439 SPDTGDTYPFRRGDAEVFGEACFGTLYDEGLVMKMKNIKSRNVLWE-GQSLSLLIKKV 269
                D+   +    E++  A FG     GL+M +K   S    +E  Q L LLI+KV
Sbjct: 350 ----EDSSSGQATKVEIY--ASFG-----GLLMMLKGDPSSAASFELDQRLFLLIRKV 396