BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00022061
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001031033.1| pentatricopeptide repeat-containing protein ...   120   2e-25
ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat...   119   2e-25
emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]   119   2e-25
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...   118   6e-25
ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat...   116   2e-24

>ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
           gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity
           to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
           gi|332190806|gb|AEE28927.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  120 bits (300), Expect = 2e-25
 Identities = 54/97 (55%), Positives = 76/97 (78%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I R I P+V T+S+L+D++ KEGK+ EA QLL+EM+QR +APN ITYNSL+DG+C + R+
Sbjct: 325 IKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRL 384

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDE 4
           EEA+ +  LM+  G +P+I+  N LINGYCKA R+D+
Sbjct: 385 EEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDD 421



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 34/96 (35%), Positives = 62/96 (64%)
 Frame = -1

Query: 288 RGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEE 109
           +G   D+ TY+ L+  +C  G+  +  +LL +MI+R ++PN +T++ L+D +  +G++ E
Sbjct: 292 KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351

Query: 108 AVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           A  +   M+  G+ PN +  N+LI+G+CK  RL+EA
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEA 387



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 36/98 (36%), Positives = 61/98 (62%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           IS+G  PD+ T++IL++ YCK  ++ +  +L  EM  R +  N +TYN+L+ G+C  G++
Sbjct: 395 ISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKL 454

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           E A  +F  MV   + P+IV+   L++G C    L++A
Sbjct: 455 EVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 32/96 (33%), Positives = 60/96 (62%)
 Frame = -1

Query: 288 RGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEE 109
           RG++ +  TY+ LV  +C+ GK+  A +L +EM+ R + P+ ++Y  L+DG C  G +E+
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491

Query: 108 AVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           A+ +F  +  + +E +I     +I+G C A ++D+A
Sbjct: 492 ALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDA 527



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/97 (34%), Positives = 57/97 (58%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +  G  P+  TY  +++  CK G+ + A +LL +M +RN+  + + Y+ ++DG C  G +
Sbjct: 220 VETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSL 279

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDE 4
           + A N+F  M   G + +I+  NTLI G+C A R D+
Sbjct: 280 DNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 30/97 (30%), Positives = 61/97 (62%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S+GI   + T SI+++ +C+  K+S A   + ++++    P+ + +N+L++G CL+ R+ 
Sbjct: 116 SKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVS 175

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           EA+ +   MV+ G +P ++  NTL+NG C   ++ +A
Sbjct: 176 EALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 33/89 (37%), Positives = 55/89 (61%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G  PD   ++ L++  C E +VSEA +L++ M++    P  IT N+L++G CL G++ +A
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKA 19
           V +   MV+TG +PN V    ++N  CK+
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKS 241



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/96 (34%), Positives = 52/96 (54%)
 Frame = -1

Query: 288 RGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEE 109
           R I  D   YSI++D  CK+G +  A  L  EM  +    + ITYN+L+ G+C  GR ++
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316

Query: 108 AVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
              +   M+   + PN+V  + LI+ + K  +L EA
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352


>ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  119 bits (299), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 74/98 (75%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I+  I+PDV  +S +VD  CKEGK++EAH +++ MI R + PN +TYN+LMDG+CLQ  M
Sbjct: 271 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 330

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +EAV VF  MV  G  PN+++ NTLINGYCK +R+D+A
Sbjct: 331 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKA 368



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 39/98 (39%), Positives = 61/98 (62%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I RG+ P+V TY+ L+D +C + ++ EA ++ + M+    APN I+YN+L++GYC   RM
Sbjct: 306 IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 365

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           ++A  +F  M    L PN V  NTL++  C   RL +A
Sbjct: 366 DKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDA 402



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/98 (37%), Positives = 56/98 (57%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           ++ G +PD+ TY IL+D  CK+  + EA  LL+ +   NM P+   Y  ++DG C  G +
Sbjct: 410 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 469

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           E A ++F  +   GL PN+     +ING C+   LDEA
Sbjct: 470 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 507



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 33/97 (34%), Positives = 61/97 (62%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S GI PDV T +IL++++C   ++  A  +L ++++    P+  T+ +L+ G C++G++ 
Sbjct: 97  SFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIG 156

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +A+++F  M+  G +PN+V   TLING CK    + A
Sbjct: 157 DALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 32/98 (32%), Positives = 60/98 (61%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           + +GI PD+ TY+ L+ + C   +      LL +MI   + P+ + +++++D  C +G++
Sbjct: 236 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 295

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            EA +V  +M+  G+EPN+V  N L++G+C    +DEA
Sbjct: 296 TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEA 333



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/90 (36%), Positives = 49/90 (54%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I  G  P+V TY  L++  CK G  + A +LL  M Q N  P+ + Y S++D  C   ++
Sbjct: 166 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 225

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYC 25
            EA N+F  MV  G+ P+I    +LI+  C
Sbjct: 226 TEAFNLFSKMVGQGISPDIFTYTSLIHSLC 255



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/95 (31%), Positives = 52/95 (54%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G  PD  T++ L+   C EGK+ +A  L ++MI     PN +TY +L++G C  G    A
Sbjct: 134 GHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 193

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           + +   M     +P++V   ++I+  CK +++ EA
Sbjct: 194 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 228



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 48/87 (55%)
 Frame = -1

Query: 276 PDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAVNV 97
           PD++ Y+I++D  C+ G++  A  +   +  + + PN  TY  +++G C +G ++EA  +
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 510

Query: 96  FLLMVDTGLEPNIVNCNTLINGYCKAK 16
           F+ M   G  P+    NT+  G  + K
Sbjct: 511 FMEMDGNGCSPDGCTYNTITQGLLQNK 537



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/97 (28%), Positives = 51/97 (52%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S+G+ P+VRTY+I+++  C+ G + EA++L  EM     +P+  TYN++  G        
Sbjct: 481 SKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEAL 540

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            A+ +   M+  G   ++     L+   C  K LD++
Sbjct: 541 RAIQLLQEMLARGFSADVSTTTLLVEMLCDDK-LDQS 576


>emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  119 bits (299), Expect = 2e-25
 Identities = 54/98 (55%), Positives = 74/98 (75%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I+  I+PDV  +S +VD  CKEGK++EAH +++ MI R + PN +TYN+LMDG+CLQ  M
Sbjct: 269 INSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEM 328

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +EAV VF  MV  G  PN+++ NTLINGYCK +R+D+A
Sbjct: 329 DEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKA 366



 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 40/98 (40%), Positives = 62/98 (63%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I RG+ P+V TY+ L+D +C + ++ EA ++ + M+    APN I+YN+L++GYC   RM
Sbjct: 304 IIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRM 363

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           ++A  +F  M    L PN V  NTL++G C   RL +A
Sbjct: 364 DKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDA 401



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 38/98 (38%), Positives = 60/98 (61%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +  G  P+V +Y+ L++ YCK  ++ +A  L EEM Q+ + PN +TYN+LM G C  GR+
Sbjct: 339 VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           ++A+ +F  MV  G  P++     L++  CK   LDEA
Sbjct: 399 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEA 436



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 37/98 (37%), Positives = 56/98 (57%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           ++ G +PD+ TY IL+D  CK+  + EA  LL+ +   NM P+   Y  ++DG C  G +
Sbjct: 409 VAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGEL 468

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           E A ++F  +   GL PN+     +ING C+   LDEA
Sbjct: 469 EAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEA 506



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 33/97 (34%), Positives = 61/97 (62%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S GI PDV T +IL++++C   +   A  +L ++++  + P+  T+ +L+ G C++G++ 
Sbjct: 95  SFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIG 154

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +A+++F  M+  G +PN+V   TLING CK    + A
Sbjct: 155 DALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 191



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 32/98 (32%), Positives = 60/98 (61%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           + +GI PD+ TY+ L+ + C   +      LL +MI   + P+ + +++++D  C +G++
Sbjct: 234 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 293

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            EA +V  +M+  G+EPN+V  N L++G+C    +DEA
Sbjct: 294 TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEA 331



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/95 (31%), Positives = 53/95 (55%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G+ PD  T++ L+   C EGK+ +A  L ++MI     PN +TY +L++G C  G    A
Sbjct: 132 GLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAA 191

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           + +   M     +P++V   ++I+  CK +++ EA
Sbjct: 192 IRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 33/90 (36%), Positives = 49/90 (54%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I  G  P+V TY  L++  CK G  + A +LL  M Q N  P+ + Y S++D  C   ++
Sbjct: 164 IGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 223

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYC 25
            EA N+F  MV  G+ P+I    +LI+  C
Sbjct: 224 TEAFNLFSKMVGQGISPDIFTYTSLIHSLC 253



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 25/87 (28%), Positives = 48/87 (55%)
 Frame = -1

Query: 276 PDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAVNV 97
           PD++ Y+I++D  C+ G++  A  +   +  + + PN  TY  +++G C +G ++EA  +
Sbjct: 450 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 509

Query: 96  FLLMVDTGLEPNIVNCNTLINGYCKAK 16
           F+ M   G  P+    NT+  G  + K
Sbjct: 510 FMEMDGNGCSPDGCTYNTITQGLLQNK 536



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/97 (28%), Positives = 51/97 (52%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S+G+ P+VRTY+I+++  C+ G + EA++L  EM     +P+  TYN++  G        
Sbjct: 480 SKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEAL 539

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            A+ +   M+  G   ++     L+   C  K LD++
Sbjct: 540 RAIQLLQEMLARGFSADVSTTTLLVEMLCDDK-LDQS 575


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score =  118 bits (295), Expect = 6e-25
 Identities = 54/98 (55%), Positives = 74/98 (75%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +SR I PDV T+SI VD +CK+G VSEA  ++  MI+R + PN +TYNSLMDGYCL  +M
Sbjct: 376 LSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQM 435

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +EA  VF +MV+ G  P++++ N LI GYCK++R+DEA
Sbjct: 436 DEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 39/98 (39%), Positives = 62/98 (63%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +++G  PDV +Y+IL+  YCK  ++ EA QL +EM  + + PN+IT+ +L+ G C  GR 
Sbjct: 446 VNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRP 505

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
             A  +F  M   G  P+++  +TL++G+CK   LDEA
Sbjct: 506 YAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEA 543



 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 37/92 (40%), Positives = 60/92 (65%)
 Frame = -1

Query: 276 PDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAVNV 97
           PD+ TYS L+   CK     E+  LL EM+ RN+ P+ +T++  +D +C +G + EA ++
Sbjct: 347 PDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSI 406

Query: 96  FLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
             LM++ GL PN+V  N+L++GYC   ++DEA
Sbjct: 407 INLMIERGLRPNVVTYNSLMDGYCLHSQMDEA 438



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 38/94 (40%), Positives = 59/94 (62%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I RG+ P+V TY+ L+D YC   ++ EA ++ + M+ +  AP+ ++YN L+ GYC   R+
Sbjct: 411 IERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERI 470

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKR 13
           +EA  +F  M   GL PN +   TLI+G C+A R
Sbjct: 471 DEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGR 504



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 37/97 (38%), Positives = 61/97 (62%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S GI P V TY+ L+   C  G+  +A  L +EM++ NM P+ +T++ L+D  C +G + 
Sbjct: 272 SIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVL 331

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           EA++VF  M+   +EP+IV  ++LI+G CK+    E+
Sbjct: 332 EALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKES 368



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/98 (32%), Positives = 58/98 (59%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +SRG  P V T++++V+  CK GK S A   +++M++ +  P  ++Y+ ++D  C    +
Sbjct: 201 MSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLV 260

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            EAV++F  M   G+ P +V  N+LI G C + +  +A
Sbjct: 261 NEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQA 298



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 30/85 (35%), Positives = 53/85 (62%)
 Frame = -1

Query: 276 PDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAVNV 97
           P+V +YSI++D+ CK   V+EA  L   M    ++P  +TYNSL+ G C  G+ ++A  +
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 96  FLLMVDTGLEPNIVNCNTLINGYCK 22
           F  M++  ++P++V  + L++  CK
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCK 326



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 27/95 (28%), Positives = 53/95 (55%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G  P + T++ L++  C EG++ EA + L+ ++ R   P   T+  +++G C  G+   A
Sbjct: 169 GFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +     MV+   EP +V+ + +I+  CK + ++EA
Sbjct: 229 IVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEA 263



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/78 (33%), Positives = 44/78 (56%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S G  PD+ TYS L+  +CK G + EA  L E + +  + PN++    L+ G C  G++E
Sbjct: 517 SHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLE 576

Query: 111 EAVNVFLLMVDTGLEPNI 58
           +A  +F  +    L+P++
Sbjct: 577 DAKELFSSLSIEELQPDV 594



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/95 (27%), Positives = 50/95 (52%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G+   V T +IL++  C    V     +L ++ +    P+ IT+N+L++G C++GR+ EA
Sbjct: 134 GVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEA 193

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +     ++  G +P +     ++NG CK  +   A
Sbjct: 194 MEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAA 228


>ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  116 bits (291), Expect = 2e-24
 Identities = 52/94 (55%), Positives = 73/94 (77%)
 Frame = -1

Query: 282 ILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAV 103
           I+PDV +++ +VD  CKEGKV+EAH ++++MIQR + PN +TY +LMDG+CL   M+EAV
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 102 NVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            VF  MV  G  PN+++ NTLINGYCK +R+D+A
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/90 (41%), Positives = 52/90 (57%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           I  G  PDV TY  L++  CK G  S A +LL  M+Q+N  PN   YN+++D  C   ++
Sbjct: 158 IGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYC 25
            EA N+F  MV  G+ P+I   N+LI+  C
Sbjct: 218 TEAFNLFSEMVTKGISPDIFTYNSLIHALC 247



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 32/98 (32%), Positives = 59/98 (60%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           +++GI PD+ TY+ L+   C   +      LL EM+   + P+ +++N+++D  C +G++
Sbjct: 228 VTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKV 287

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            EA +V   M+  G+EPN+V    L++G+C    +DEA
Sbjct: 288 TEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEA 325



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 30/98 (30%), Positives = 58/98 (59%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           + +   P+V  Y+ ++D+ CK+ +V+EA  L  EM+ + ++P+  TYNSL+   C     
Sbjct: 193 VQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEW 252

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +    +   MVD+ + P++V+ NT+++  CK  ++ EA
Sbjct: 253 KHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEA 290



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/98 (32%), Positives = 60/98 (61%)
 Frame = -1

Query: 294 ISRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRM 115
           + +G +P+V +Y+ L++ YCK  ++ +A  L  EM ++ + P+ +TY++L+ G C   R+
Sbjct: 333 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 114 EEAVNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           ++A+ +F  MV     PN+V    L++  CK + L EA
Sbjct: 393 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEA 430



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 32/95 (33%), Positives = 52/95 (54%)
 Frame = -1

Query: 285 GILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEA 106
           G  PD  T++ L+     EGK+ EA  L ++MI     P+ +TY +L++G C  G    A
Sbjct: 126 GHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAA 185

Query: 105 VNVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           + +   MV    +PN+   NT+I+  CK +++ EA
Sbjct: 186 IRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/90 (33%), Positives = 56/90 (62%)
 Frame = -1

Query: 291 SRGILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRME 112
           S GI P++ T  IL++++C   +V  A  +L ++++    P+  T+ +L+ G  ++G++ 
Sbjct: 89  SFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIG 148

Query: 111 EAVNVFLLMVDTGLEPNIVNCNTLINGYCK 22
           EA+++F  M+  G  P++V   TLING CK
Sbjct: 149 EALHLFDKMIGEGFRPDVVTYGTLINGLCK 178



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/93 (35%), Positives = 54/93 (58%)
 Frame = -1

Query: 279 LPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAVN 100
           +P++ TY IL+D  CK   ++EA  LL+ +   N+ P+    N  +DG C  G +E A +
Sbjct: 408 IPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARD 467

Query: 99  VFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
           +F  +   GL+P++   + +ING C+   LDEA
Sbjct: 468 LFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEA 500



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/94 (31%), Positives = 50/94 (53%)
 Frame = -1

Query: 282 ILPDVRTYSILVDTYCKEGKVSEAHQLLEEMIQRNMAPNNITYNSLMDGYCLQGRMEEAV 103
           ++PD  TYS L+   C   ++ +A  L  EM+  +  PN +TY  L+D  C    + EA+
Sbjct: 372 LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAM 431

Query: 102 NVFLLMVDTGLEPNIVNCNTLINGYCKAKRLDEA 1
            +   +  + L+P+I   N  I+G C+A  L+ A
Sbjct: 432 ALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA 465