BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021955
         (404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65773.1| hypothetical protein VITISV_030410 [Vitis vinifera]   119   3e-25
ref|XP_002519430.1| RING-H2 finger protein ATL3C, putative [Rici...    92   6e-17
ref|XP_002325888.1| predicted protein [Populus trichocarpa] gi|2...    86   3e-15
ref|NP_197262.1| RING-H2 finger protein ATL52 [Arabidopsis thali...    86   4e-15
gb|ABK25333.1| unknown [Picea sitchensis]                              86   4e-15

>emb|CAN65773.1| hypothetical protein VITISV_030410 [Vitis vinifera]
          Length = 269

 Score =  119 bits (298), Expect = 3e-25
 Identities = 56/110 (50%), Positives = 80/110 (72%), Gaps = 3/110 (2%)
 Frame = +2

Query: 80  PSQLLFTPLMISMVGIVSTALAILLYNIILTKYCVRRQGTMSRP---AQQSVMGVGVDEK 250
           P   +FTPL+ISMVGI+ T+L I++Y++++ KYC+RRQ    RP   A +  +  GVD K
Sbjct: 10  PHASIFTPLLISMVGILGTSLVIVVYHLVIVKYCLRRQAD-PRPLLSAPRXRLSTGVDAK 68

Query: 251 VLDSIPILAYKAEEGGLFRVDQTECAVCLGEFNEGEVVRLLPNCRHAFHV 400
           +L++IPIL+Y  ++G LF  DQ+ECAVCL E  + + VRLLP+C HAFH+
Sbjct: 69  ILETIPILSYSKKKGLLFHADQSECAVCLAELEDDDXVRLLPSCHHAFHI 118


>ref|XP_002519430.1| RING-H2 finger protein ATL3C, putative [Ricinus communis]
           gi|223541293|gb|EEF42844.1| RING-H2 finger protein
           ATL3C, putative [Ricinus communis]
          Length = 329

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 6/117 (5%)
 Frame = +2

Query: 68  PQSQPSQLLFTPLMISMVGIVSTALAILLYNIILTKYCVRRQGTMSR------PAQQSVM 229
           P SQP  L  +PL++S+  +   ++ I  Y+++L ++C+RR+ +++       P Q+  M
Sbjct: 6   PPSQPQGLFVSPLLVSLSIVGCVSMIIAAYHLLLVRFCIRRRRSITTNDSFTIPVQE--M 63

Query: 230 GVGVDEKVLDSIPILAYKAEEGGLFRVDQTECAVCLGEFNEGEVVRLLPNCRHAFHV 400
             GV+E VL +IPIL Y   +      DQTEC +CLGE  +G+ VR LPNC H FHV
Sbjct: 64  RTGVEEDVLKAIPILLYSKVDH-----DQTECVICLGELEDGDKVRSLPNCGHVFHV 115


>ref|XP_002325888.1| predicted protein [Populus trichocarpa] gi|222862763|gb|EEF00270.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 12/113 (10%)
 Frame = +2

Query: 98  TPLMISMVGIVSTALAILLYNIILTKYCVRR------------QGTMSRPAQQSVMGVGV 241
           +PL I+ +GI+++A  ++ Y+ +++KYC RR            Q  M   A Q + G G+
Sbjct: 55  SPLTIAFIGILASAFILVTYHTLVSKYCSRRGHGNDTTELNDNQDQMGNEASQGIPG-GL 113

Query: 242 DEKVLDSIPILAYKAEEGGLFRVDQTECAVCLGEFNEGEVVRLLPNCRHAFHV 400
           DE VL SI I  YK  +G    V+ T+C+VCLGEF E E +R LP C HAFH+
Sbjct: 114 DEAVLKSITICKYKKGDGF---VEGTDCSVCLGEFQENESLRRLPKCSHAFHL 163


>ref|NP_197262.1| RING-H2 finger protein ATL52 [Arabidopsis thaliana]
           gi|68565306|sp|Q9LF64.1|ATL52_ARATH RecName:
           Full=RING-H2 finger protein ATL52
           gi|9755785|emb|CAC01904.1| RING-H2 zinc finger
           protein-like [Arabidopsis thaliana]
           gi|332005064|gb|AED92447.1| RING-H2 finger protein ATL52
           [Arabidopsis thaliana]
          Length = 362

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 15/127 (11%)
 Frame = +2

Query: 65  EPQSQPSQLLFTPLMISMVGIVSTALAILLYNIILTKYCVRR---------------QGT 199
           +  S  S   F+PL+I+++GI+++AL ++ Y  +++KYC R                +G 
Sbjct: 44  DDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGF 103

Query: 200 MSRPAQQSVMGVGVDEKVLDSIPILAYKAEEGGLFRVDQTECAVCLGEFNEGEVVRLLPN 379
            S   + S  G G++E ++ SI +  YK+ +G    VD ++C+VCL EF E E +RLLP 
Sbjct: 104 FSSTQRISTNGDGLNESMIKSITVYKYKSGDGF---VDGSDCSVCLSEFEENESLRLLPK 160

Query: 380 CRHAFHV 400
           C HAFH+
Sbjct: 161 CNHAFHL 167


>gb|ABK25333.1| unknown [Picea sitchensis]
          Length = 413

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 20/143 (13%)
 Frame = +2

Query: 32  SCQ*YDQMGDKEPQSQPSQLLFTPLMISMVGIVSTALAILLYNIILTKYCVRRQGTMSR- 208
           SC  +      E  ++ S   F+PL+I+++GI+++A  ++ Y  IL KYC       SR 
Sbjct: 34  SCYPFSPPPPFELGNRDSDPTFSPLVIAIIGILASAFLLVFYYAILAKYCTSWDSFRSRM 93

Query: 209 -----------------PAQQS--VMGVGVDEKVLDSIPILAYKAEEGGLFRVDQTECAV 331
                            P+  S  ++ VG++E  + SIP+  YK  +G    VD T+C+V
Sbjct: 94  RGGGYNDSYEDEDHNLTPSNDSWPLVTVGLEESTIRSIPVYKYKRGDG---LVDCTDCSV 150

Query: 332 CLGEFNEGEVVRLLPNCRHAFHV 400
           CL EF+E + VRLLP C HAFHV
Sbjct: 151 CLSEFHEDDSVRLLPKCNHAFHV 173