BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021948
         (1404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin...    87   1e-14
ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinif...    80   2e-12
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ...    79   2e-12
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ...    78   6e-12
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]    77   1e-11

>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
          Length = 393

 Score = 86.7 bits (213), Expect = 1e-14
 Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
 Frame = +3

Query: 294 YKGNFYALRFNGTLDIVNGLDGLSPPTVSLVASVEGYE-AGNDNYLVASSDDLWKVIRF- 467
           Y G F+A+   GT+ + +  +G  PP VS++ +   +  AG+ +Y V S+ D+  +IR  
Sbjct: 210 YNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTTTPFGFAGDIHYAVFSAGDMLLLIRVL 269

Query: 468 ---FHDFIEDE----YRFTKAFNVFKLDFSKSKSVEVEDIGDHAFFVGSNNSFSVIASDF 626
              F D   +E    YR T  F VFK+++       VE +G+   FVG N+S S  ASDF
Sbjct: 270 DQDFSDHAGEESDLVYR-TVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCASDF 328

Query: 627 PGCRENCIYFSDD-----DRDSC-------YRGHDKLEGW*Y*GNLSN*RQICFCPCPMW 770
            GC  +CIYF+DD     D D+C       +R  DK        N ++  ++ + P P+W
Sbjct: 329 VGCSADCIYFTDDYSESNDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRW-PLPIW 387

Query: 771 YSPN*C 788
            SPN C
Sbjct: 388 VSPNPC 393


>ref|XP_002278342.1| PREDICTED: F-box protein SKIP23 [Vitis vinifera]
          Length = 375

 Score = 79.7 bits (195), Expect = 2e-12
 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 7/140 (5%)
 Frame = +3

Query: 291 FYKGNFYALRFNG-TLDIVNGLDGLSPPTVSLVASVEGYEAGNDNYLVASSDDLWKVIRF 467
           F+ G FYA+   G T+ +  G    SPP +SL+A  +    GN   LV S+ +L  V  +
Sbjct: 203 FFNGEFYAVDNTGRTVVVAIG----SPPVLSLIA--DSVIGGNKKSLVESNGELLMVNTY 256

Query: 468 FHDFIEDEYRFTKAFNVFKLDFSKSKSVEVEDIGDHAFFVGSNNSFSVIASDFPGCRENC 647
           F   I         F VFKL+      VEVE++GD   F+G  ++FS +AS+F GC  NC
Sbjct: 257 FDQGIHGIMNRAVRFKVFKLNQIGHMWVEVENLGDRILFLGEKSTFSAVASEFCGCEGNC 316

Query: 648 IY------FSDDDRDSCYRG 689
           IY      F +D  D  Y G
Sbjct: 317 IYYTNSFFFPNDQEDDAYTG 336


>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 398

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
 Frame = +3

Query: 291 FYKGNFYALRFNGTLDIVNGLDGLSPPTVSLVASVEGYEAGND-NYLVASSDDLWKVIRF 467
           F  G FYA+   G + I +       P VS + +    +AG D  YLV S D+L  V R+
Sbjct: 217 FVNGMFYAVNKAGQIVICD--ISSDSPRVSFMETPR--QAGGDMQYLVNSGDELLLVTRY 272

Query: 468 FHDFIEDEYRF------------TKAFNVFKLDFSKSKSVEVEDIGDHAFFVGSNNSFSV 611
               ++ EY F            T  F VF+LD++  + + +  +GD A F+G N+S S+
Sbjct: 273 ----LDLEYEFDHPDMEPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSL 328

Query: 612 IASDFPGCRENCIYFSDDDRDSCYRGH 692
            A+DF GC  NCIY++DD  D+ Y GH
Sbjct: 329 SATDFSGCMGNCIYYTDDYLDANYDGH 355


>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 389

 Score = 77.8 bits (190), Expect = 6e-12
 Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
 Frame = +3

Query: 291 FYKGNFYALRFNGTLDIVNGLDGLSPPTVSLVASVEGYEAGNDNYLVASSDDLWKVIRFF 470
           F++G FYA+   G++ + + + G S P VS++   + +  G+  YLV S ++L  V R+ 
Sbjct: 214 FHRGLFYAVNKYGSIAVCD-VSG-SSPRVSIIEMPQQF-GGDLQYLVESGEELLLVTRYL 270

Query: 471 ---HDFIEDE----YRFTKAFNVFKLDFSKSKSVEVEDIGDHAFFVGSNNSFSVIASDFP 629
              +D   D+    YR T+ F V +LD    +   V  +GD A F+G N S S+ + DFP
Sbjct: 271 DLTYDVEPDQTSLIYRTTR-FQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFP 329

Query: 630 GCRENCIYFSDDDRDSCYRG 689
           GC+ NCIY++DD  +  Y G
Sbjct: 330 GCKGNCIYYTDDYSEDNYDG 349


>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
          Length = 389

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 50/140 (35%), Positives = 79/140 (56%), Gaps = 7/140 (5%)
 Frame = +3

Query: 291 FYKGNFYALRFNGTLDIVNGLDGLSPPTVSLVASVEGYEAGNDNYLVASSDDLWKVIRFF 470
           F++G FYA+   G++ + + + G S P VS++   + +  G+  YLV S ++L  V R+ 
Sbjct: 214 FHRGLFYAVNKYGSIAVCD-VSG-SSPRVSIIEMPQQF-GGDLQYLVESGEELLLVTRYL 270

Query: 471 ---HDFIEDE----YRFTKAFNVFKLDFSKSKSVEVEDIGDHAFFVGSNNSFSVIASDFP 629
              +D   D+    YR T+ F V +LD    +   V  +GD A F+G N S S+ + DFP
Sbjct: 271 DLTYDVEXDQTSLIYRTTR-FQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFP 329

Query: 630 GCRENCIYFSDDDRDSCYRG 689
           GC+ NCIY++DD  +  Y G
Sbjct: 330 GCKGNCIYYTDDYSEDNYDG 349