BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021869
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCI55333.1| PH01B019A14.2 [Phyllostachys edulis]                   94   9e-18
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    91   8e-17
gb|AAU90288.2| Polyprotein, putative [Solanum demissum]                89   4e-16
emb|CAN83798.1| hypothetical protein VITISV_039072 [Vitis vinifera]    88   8e-16
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               87   1e-15

>emb|CCI55333.1| PH01B019A14.2 [Phyllostachys edulis]
          Length = 190

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 43/81 (53%), Positives = 55/81 (67%)
 Frame = +1

Query: 1   DGTVRYPIPKALAAELTTASKEPTCYSQAVKHPAWRSAMTDEFNALLKNHTWSLVPPSST 180
           D T+RY + +   A + T   EPT Y++A++ P W+ AM  EF  LLKN TW LVPP   
Sbjct: 100 DETIRYDVVRRKHACMVTL--EPTSYTEALEEPCWKQAMDQEFTTLLKNETWHLVPPDRG 157

Query: 181 QNTVDCKWVFRLKLKADGSIE 243
           QN +DCKWVF+LK KADGSI+
Sbjct: 158 QNVIDCKWVFKLKRKADGSID 178


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 46/84 (54%), Positives = 58/84 (69%)
 Frame = +1

Query: 1    DGTVRYPIPKALAAELTTASKEPTCYSQAVKHPAWRSAMTDEFNALLKNHTWSLVPPSST 180
            DGTVRY      AA +T    EP+  S+A+  P WR+AM  EF AL KN+TW+LVPP  T
Sbjct: 910  DGTVRYG---NAAARIT----EPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRT 962

Query: 181  QNTVDCKWVFRLKLKADGSIERPK 252
            +N +DCKWVF++K  ADGSI+R K
Sbjct: 963  RNLIDCKWVFKVKYNADGSIDRLK 986


>gb|AAU90288.2| Polyprotein, putative [Solanum demissum]
          Length = 1017

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 38/68 (55%), Positives = 54/68 (79%)
 Frame = +1

Query: 49  TTASKEPTCYSQAVKHPAWRSAMTDEFNALLKNHTWSLVPPSSTQNTVDCKWVFRLKLKA 228
           T+A  EP+C+S+A+K   WR AM++E+NAL++N TW LVP S +QN + CKWVF+ KLK+
Sbjct: 630 TSAIVEPSCHSRAIKDVHWRHAMSEEYNALIQNGTWELVPLSPSQNIIGCKWVFKRKLKS 689

Query: 229 DGSIERPK 252
           DGS++R K
Sbjct: 690 DGSLDRYK 697


>emb|CAN83798.1| hypothetical protein VITISV_039072 [Vitis vinifera]
          Length = 787

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
 Frame = +1

Query: 25  PKALAAELTTASK----EPTCYSQAVKHPAWRSAMTDEFNALLKNHTWSLVPPSSTQNTV 192
           PK L A+   +S+    EPT Y QA +H  WR AM  EF ALL N+TW+LVPP+  Q  +
Sbjct: 427 PKLLLADYGASSELDLFEPTTYHQAARHAHWRQAMDTEFYALLNNNTWTLVPPTLGQKVI 486

Query: 193 DCKWVFRLKLKADGSIE 243
            CKWVF++KLK DGS+E
Sbjct: 487 GCKWVFKIKLKPDGSVE 503


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
 Frame = +1

Query: 19   PIPK-ALAAELTTASKEPTCYSQAVKHPAWRSAMTDEFNALLKNHTWSLVPPSSTQNTVD 195
            P PK A+ + L     EPTCY+QA K+P WR AM  EF AL +  TW LVPPSS  N + 
Sbjct: 857  PNPKYAMHSTLLALPLEPTCYTQAAKYPEWREAMDHEFKALQQAGTWFLVPPSSLMNILP 916

Query: 196  CKWVFRLKLKADGSIERPK 252
             KWVFR+K ++DGS+ER K
Sbjct: 917  NKWVFRIKKRSDGSVERYK 935