BLASTX nr result

ID: Coptis24_contig00021857 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021857
         (226 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32284.3| unnamed protein product [Vitis vinifera]              105   4e-21
ref|XP_002270535.1| PREDICTED: U3 small nucleolar RNA-associated...   105   4e-21
emb|CAN67842.1| hypothetical protein VITISV_016665 [Vitis vinifera]   105   4e-21
ref|XP_002524308.1| U3 small nucleolar RNA-associated protein, p...   105   5e-21
ref|XP_002301560.1| predicted protein [Populus trichocarpa] gi|2...   100   1e-19

>emb|CBI32284.3| unnamed protein product [Vitis vinifera]
          Length = 460

 Score =  105 bits (262), Expect = 4e-21
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +2

Query: 2   VSNLDIEELGLLMRFLHKYTTMPSYSGFLIGFTKKVLQMHAEDVNASDVLKWHVRQLKLS 181
           VSNLD EELGLL+ FLH+++T+P Y+G L+G TKKV+QM AED+ ASDVLK H+R LK S
Sbjct: 373 VSNLDTEELGLLLAFLHRHSTVPRYAGLLMGLTKKVVQMRAEDIIASDVLKGHIRNLKRS 432

Query: 182 VEEEIHTHQSLQEIQ 226
           VEEE+   QSLQEIQ
Sbjct: 433 VEEEVRIQQSLQEIQ 447


>ref|XP_002270535.1| PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog
           [Vitis vinifera]
          Length = 528

 Score =  105 bits (262), Expect = 4e-21
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +2

Query: 2   VSNLDIEELGLLMRFLHKYTTMPSYSGFLIGFTKKVLQMHAEDVNASDVLKWHVRQLKLS 181
           VSNLD EELGLL+ FLH+++T+P Y+G L+G TKKV+QM AED+ ASDVLK H+R LK S
Sbjct: 441 VSNLDTEELGLLLAFLHRHSTVPRYAGLLMGLTKKVVQMRAEDIIASDVLKGHIRNLKRS 500

Query: 182 VEEEIHTHQSLQEIQ 226
           VEEE+   QSLQEIQ
Sbjct: 501 VEEEVRIQQSLQEIQ 515


>emb|CAN67842.1| hypothetical protein VITISV_016665 [Vitis vinifera]
          Length = 570

 Score =  105 bits (262), Expect = 4e-21
 Identities = 51/75 (68%), Positives = 62/75 (82%)
 Frame = +2

Query: 2   VSNLDIEELGLLMRFLHKYTTMPSYSGFLIGFTKKVLQMHAEDVNASDVLKWHVRQLKLS 181
           VSNLD EELGLL+ FLH+++T+P Y+G L+G TKKV+QM AED+ ASDVLK H+R LK S
Sbjct: 441 VSNLDTEELGLLLAFLHRHSTVPRYAGLLMGLTKKVVQMRAEDIIASDVLKGHIRNLKRS 500

Query: 182 VEEEIHTHQSLQEIQ 226
           VEEE+   QSLQEIQ
Sbjct: 501 VEEEVRIQQSLQEIQ 515


>ref|XP_002524308.1| U3 small nucleolar RNA-associated protein, putative [Ricinus
           communis] gi|223536399|gb|EEF38048.1| U3 small nucleolar
           RNA-associated protein, putative [Ricinus communis]
          Length = 525

 Score =  105 bits (261), Expect = 5e-21
 Identities = 51/75 (68%), Positives = 60/75 (80%)
 Frame = +2

Query: 2   VSNLDIEELGLLMRFLHKYTTMPSYSGFLIGFTKKVLQMHAEDVNASDVLKWHVRQLKLS 181
           VSNLD EELGLL+ FLHKY+TMP +SG L+G T+KVL M A+D+ ASD LK H+R LK S
Sbjct: 438 VSNLDEEELGLLLGFLHKYSTMPRHSGLLMGLTRKVLDMRADDIKASDALKGHIRNLKRS 497

Query: 182 VEEEIHTHQSLQEIQ 226
           VEEEI  H +LQEIQ
Sbjct: 498 VEEEIRIHHALQEIQ 512


>ref|XP_002301560.1| predicted protein [Populus trichocarpa] gi|222843286|gb|EEE80833.1|
           predicted protein [Populus trichocarpa]
          Length = 534

 Score =  100 bits (249), Expect = 1e-19
 Identities = 50/75 (66%), Positives = 59/75 (78%)
 Frame = +2

Query: 2   VSNLDIEELGLLMRFLHKYTTMPSYSGFLIGFTKKVLQMHAEDVNASDVLKWHVRQLKLS 181
           V NLD EELGLL+ FLHK++TMP +SG L+G TKKVL+M A+D+ ASD LK H+R LK S
Sbjct: 447 VVNLDEEELGLLLGFLHKHSTMPRHSGLLMGLTKKVLEMRADDIRASDALKSHIRNLKRS 506

Query: 182 VEEEIHTHQSLQEIQ 226
           VEEEI    SLQEIQ
Sbjct: 507 VEEEIRIQHSLQEIQ 521


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