BLASTX nr result

ID: Coptis24_contig00021846 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021846
         (208 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK34959.1| unknown [Lotus japonicus]                               55   5e-06
gb|AFK44138.1| unknown [Medicago truncatula]                           55   8e-06
ref|XP_002317295.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-06

>gb|AFK34959.1| unknown [Lotus japonicus]
          Length = 305

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = -3

Query: 122 PTNKKTCATSFTTRAMLSSTKESVLKDFHQRRALKIISGL 3
           P  ++ C   FTTRA+LSSTKE+VLKDF +RRALKIISGL
Sbjct: 35  PLKRRAC---FTTRALLSSTKETVLKDFQERRALKIISGL 71


>gb|AFK44138.1| unknown [Medicago truncatula]
          Length = 307

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/32 (84%), Positives = 30/32 (93%)
 Frame = -3

Query: 98  TSFTTRAMLSSTKESVLKDFHQRRALKIISGL 3
           TSFTTRA+LSSTKESVLKDF +R ALKII+GL
Sbjct: 43  TSFTTRALLSSTKESVLKDFRERTALKIITGL 74


>ref|XP_002317295.1| predicted protein [Populus trichocarpa] gi|222860360|gb|EEE97907.1|
           predicted protein [Populus trichocarpa]
          Length = 304

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -3

Query: 110 KTCATSFTTRAMLSSTKESVLKDFHQRRALKIISGL 3
           K  A+  TTRA+LS+TKE+VLKDFH+RRALKIISGL
Sbjct: 36  KIRASYLTTRALLSTTKETVLKDFHERRALKIISGL 71


Top