BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021832
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34639.3| unnamed protein product [Vitis vinifera]               69   3e-10
ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup9...    69   3e-10
ref|XP_004173129.1| PREDICTED: nuclear pore complex protein Nup9...    66   3e-09
ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis ...    66   3e-09
dbj|BAF98996.1| nucleoporin 98 [Daucus carota]                         63   2e-08

>emb|CBI34639.3| unnamed protein product [Vitis vinifera]
          Length = 1047

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 41/90 (45%), Positives = 51/90 (56%)
 Frame = -3

Query: 271 TSPFVSSQSPFGGKAPAMFKTARPFGRASFLSGGKDAPLAPDGIFMGSTVAGYSQTAELG 92
           TSPF +  SPFG +A         FG+++F  GG+           GS VA Y+ T E+ 
Sbjct: 302 TSPFGAQSSPFGAQATTPTFGGTGFGQSAF--GGQRG---------GSRVAAYTPTTEVD 350

Query: 91  LDNTLHACGKLQSISAMPVYKDKSHEVLRW 2
             +     GKL+SISAMPVYKDKSHE LRW
Sbjct: 351 SGSGTQPVGKLESISAMPVYKDKSHEELRW 380


>ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1
           [Vitis vinifera]
          Length = 1013

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 41/90 (45%), Positives = 51/90 (56%)
 Frame = -3

Query: 271 TSPFVSSQSPFGGKAPAMFKTARPFGRASFLSGGKDAPLAPDGIFMGSTVAGYSQTAELG 92
           TSPF +  SPFG +A         FG+++F  GG+           GS VA Y+ T E+ 
Sbjct: 285 TSPFGAQSSPFGAQATTPTFGGTGFGQSAF--GGQRG---------GSRVAAYTPTTEVD 333

Query: 91  LDNTLHACGKLQSISAMPVYKDKSHEVLRW 2
             +     GKL+SISAMPVYKDKSHE LRW
Sbjct: 334 SGSGTQPVGKLESISAMPVYKDKSHEELRW 363


>ref|XP_004173129.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like, partial
           [Cucumis sativus]
          Length = 436

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -3

Query: 271 TSPFVSSQSPFGGKAPAMFKTARPFGRASFLSGGKDAPLAPDGIFMGSTVAGYSQTAELG 92
           TSPF +  SPFG ++ + F T+  FG+A F  GG+           GS V  Y+ T E  
Sbjct: 102 TSPFGAQSSPFGAQSTSSFGTSG-FGQAGF--GGQRG---------GSRVTPYAPTPEPD 149

Query: 91  LDN-TLHACGKLQSISAMPVYKDKSHEVLRW 2
             + +  A GKL+SISAMPVYKDKSHE LRW
Sbjct: 150 PGSGSTQAAGKLESISAMPVYKDKSHEELRW 180


>ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis sativus]
          Length = 994

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -3

Query: 271 TSPFVSSQSPFGGKAPAMFKTARPFGRASFLSGGKDAPLAPDGIFMGSTVAGYSQTAELG 92
           TSPF +  SPFG ++ + F T+  FG+A F  GG+           GS V  Y+ T E  
Sbjct: 294 TSPFGAQSSPFGAQSTSSFGTSG-FGQAGF--GGQRG---------GSRVTPYAPTPEPD 341

Query: 91  LDN-TLHACGKLQSISAMPVYKDKSHEVLRW 2
             + +  A GKL+SISAMPVYKDKSHE LRW
Sbjct: 342 PGSGSTQAAGKLESISAMPVYKDKSHEELRW 372


>dbj|BAF98996.1| nucleoporin 98 [Daucus carota]
          Length = 1005

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 39/89 (43%), Positives = 48/89 (53%)
 Frame = -3

Query: 268 SPFVSSQSPFGGKAPAMFKTARPFGRASFLSGGKDAPLAPDGIFMGSTVAGYSQTAELGL 89
           SPF +  S FG +  +    +  FG ++F  GG+           GS VA Y+ TAE   
Sbjct: 287 SPFGAPSSTFGAQTSSPAFGSPGFGSSTF--GGQRG---------GSRVAAYTPTAEADA 335

Query: 88  DNTLHACGKLQSISAMPVYKDKSHEVLRW 2
                  GKL+SISAMPVYKDKSHE LRW
Sbjct: 336 GTGTQPAGKLESISAMPVYKDKSHEELRW 364