BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021826
         (216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat...    47   2e-06
emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]    42   3e-06
ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat...    45   5e-06
ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containi...    45   5e-06
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    44   6e-06

>ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 46.6 bits (109), Expect(2) = 2e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = -1

Query: 150 SIAVLGNILKRGFQPNAFTFNALIKGMFLDGKPTPALELFNKMVANRY 7
           S  VLG ILK G+QPN  T N L+KG+ L G+   +L   +K+VA  +
Sbjct: 64  SFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGF 111



 Score = 29.6 bits (65), Expect(2) = 2e-06
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 214 SMYNAMGSAGVQPDIVTLSTLINC 143
           S++  M   G++PD+ TL+ LINC
Sbjct: 31  SLFKQMQVKGIEPDLFTLNILINC 54


>emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 41.6 bits (96), Expect(2) = 3e-06
 Identities = 19/49 (38%), Positives = 31/49 (63%)
 Frame = -1

Query: 168  LRFLH*SIAVLGNILKRGFQPNAFTFNALIKGMFLDGKPTPALELFNKM 22
            LR +     V G  LKRGF+P+A T   L+KG++++     A++LF++M
Sbjct: 994  LRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEM 1042



 Score = 33.9 bits (76), Expect(2) = 3e-06
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 211  MYNAMGSAGVQPDIVTLSTLINCC 140
            MY  +   G+QPD+ TL+ LI+CC
Sbjct: 968  MYRKINDVGIQPDLYTLNILIHCC 991


>ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score = 45.4 bits (106), Expect(2) = 5e-06
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -1

Query: 144 AVLGNILKRGFQPNAFTFNALIKGMFLDGKPTPALELFNKMVA 16
           +VL  ILKRG+QP+  TF  LIKG+ L G+   AL   +K++A
Sbjct: 115 SVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLA 157



 Score = 29.6 bits (65), Expect(2) = 5e-06
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 214 SMYNAMGSAGVQPDIVTLSTLINC 143
           S+ + +   G+QPD++TL+ LINC
Sbjct: 80  SLSHRLELKGIQPDLITLNILINC 103


>ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 44.7 bits (104), Expect(2) = 5e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = -1

Query: 150 SIAVLGNILKRGFQPNAFTFNALIKGMFLDGKPTPALELFNKMVANRY 7
           S +VLG ILK G+QPN    N L+KG+ L G+   +L   +K+VA  +
Sbjct: 64  SFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGF 111



 Score = 30.4 bits (67), Expect(2) = 5e-06
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 214 SMYNAMGSAGVQPDIVTLSTLINC 143
           S+   M + G+ PD+VTLS LINC
Sbjct: 31  SLSKQMEAKGIVPDLVTLSILINC 54


>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 43.9 bits (102), Expect(2) = 6e-06
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = -1

Query: 147 IAVLGNILKRGFQPNAFTFNALIKGMFLDGKPTPALELFNKMVANRY 7
           +AVLG +L+RG  PN  TF +L+KG+ L  + + A  L  KMV   Y
Sbjct: 147 LAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGY 193



 Score = 30.8 bits (68), Expect(2) = 6e-06
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 214 SMYNAMGSAGVQPDIVTLSTLINC 143
           S+Y  M   G+ PD +TL+ LINC
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINC 136