BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021793
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   276   1e-72
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   265   6e-69
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   252   4e-65
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]   248   4e-64
gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]             248   7e-64

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  276 bits (707), Expect = 1e-72
 Identities = 143/203 (70%), Positives = 157/203 (77%), Gaps = 7/203 (3%)
 Frame = +2

Query: 2   SHVIRGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTL 181
           SHVIR GDKVNCTISELQPLRAEPEDIPLDIV+ED HVLVVNKPAHMVVHPAPGNA+GTL
Sbjct: 115 SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTL 174

Query: 182 VNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIG-------SSIRPGIVH 340
           VNGILHHC+LP                +E     DD  +S   G       ++IRPGIVH
Sbjct: 175 VNGILHHCSLPTVALPNRD--------SEEDDISDDEFNSFAAGQNCGTCETNIRPGIVH 226

Query: 341 RLDKGTSGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINN 520
           RLDKGTSGLLVVAKDE+SHAHLSEQFK H+IHRVYISLTSGVPT LSGRVE+P+GRD NN
Sbjct: 227 RLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNN 286

Query: 521 RIRMAAIPCPSVSRQVRHRSEEH 589
           RIRM A+P PS S Q RH +  +
Sbjct: 287 RIRMTAVPGPSNSGQARHAASRY 309


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  265 bits (676), Expect = 6e-69
 Identities = 133/191 (69%), Positives = 148/191 (77%)
 Frame = +2

Query: 2   SHVIRGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTL 181
           SH ++ GDKV CTISELQPLRAEPED+PLDIV+ED H+LVVNKP HMVVHPAPGN  GTL
Sbjct: 110 SHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTGTL 169

Query: 182 VNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSIRPGIVHRLDKGTS 361
           VNGILHHC LP                AE     D+RS S    SSIRPGIVHRLDKGTS
Sbjct: 170 VNGILHHCNLPTVAISSQEVLSD----AEDRSDDDERSYSSSCESSIRPGIVHRLDKGTS 225

Query: 362 GLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAI 541
           GLLVVAKDE++HAHLSEQFKQHTI RVYISLTSGVP+ L+GR+++PIGRD+NNRIRM AI
Sbjct: 226 GLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAI 285

Query: 542 PCPSVSRQVRH 574
           P P    + RH
Sbjct: 286 PGPIKQGRARH 296


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  252 bits (643), Expect = 4e-65
 Identities = 130/197 (65%), Positives = 149/197 (75%), Gaps = 1/197 (0%)
 Frame = +2

Query: 2   SHVIRGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTL 181
           SH ++ GDKVNC ISELQPLRAEPE+IPLDIV+ED +VLVVNKPAHMVVHPAPGNA GTL
Sbjct: 132 SHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVHPAPGNATGTL 191

Query: 182 VNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRS-SSMEIGSSIRPGIVHRLDKGT 358
           VNGILHHC+LP                AE     DD    S    +S+RPGIVHRLDKGT
Sbjct: 192 VNGILHHCSLPTVSSQEVLSG------AEDVSDDDDEGLCSSSYAASVRPGIVHRLDKGT 245

Query: 359 SGLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAA 538
           SGLLVVAKDE+SHAHLSEQFK HTI RVY+SLT GVP  ++GR++VPIGRD++NRIRMAA
Sbjct: 246 SGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAA 305

Query: 539 IPCPSVSRQVRHRSEEH 589
           I  P+   Q RH +  +
Sbjct: 306 IVEPN-RGQARHAASRY 321


>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score =  248 bits (634), Expect = 4e-64
 Identities = 130/196 (66%), Positives = 144/196 (73%)
 Frame = +2

Query: 2   SHVIRGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTL 181
           SHVIR GDKVNCTISELQPLRAEPEDIPLDIV+ED HV          VHPAPGNA+GTL
Sbjct: 271 SHVIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHV----------VHPAPGNASGTL 320

Query: 182 VNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSIRPGIVHRLDKGTS 361
           VNGILHHC+LP                 EF      ++      ++IRPGIVHRLDKGTS
Sbjct: 321 VNGILHHCSLPTVALPNRDSEEDDILDDEFNSFAAGQNCGT-CETNIRPGIVHRLDKGTS 379

Query: 362 GLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAI 541
           GLLVVAKDE+SHAHLSEQFK H+IHRVYISLTSGVPT LSGRVE+P+GRD NNRIRM A+
Sbjct: 380 GLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAV 439

Query: 542 PCPSVSRQVRHRSEEH 589
           P PS S Q RH +  +
Sbjct: 440 PGPSNSGQARHAASRY 455


>gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
          Length = 980

 Score =  248 bits (632), Expect = 7e-64
 Identities = 123/196 (62%), Positives = 146/196 (74%)
 Frame = +2

Query: 2    SHVIRGGDKVNCTISELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTL 181
            SH ++ GD+VNCTISELQPL+AE EDIPLDIV+ED HVLVVNKPAHMVVHPAPGN  GTL
Sbjct: 670  SHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTL 729

Query: 182  VNGILHHCALPXXXXXXXXXXXXXXXXAEFTGSHDDRSSSMEIGSSIRPGIVHRLDKGTS 361
            VNGILHHC+LP                  F+   +  +S     +S+RPGIVHRLDKGT+
Sbjct: 730  VNGILHHCSLPCVDYSNSEEDDDSDEET-FSDDEEMTTSPSSYAASVRPGIVHRLDKGTT 788

Query: 362  GLLVVAKDEYSHAHLSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAI 541
            GLLVVAKDE+SHAHL+EQFK HTI RVY+SLT+GVP+   GR+E+PIGRD +NRIRMAAI
Sbjct: 789  GLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAI 848

Query: 542  PCPSVSRQVRHRSEEH 589
            P      + RH +  +
Sbjct: 849  PGGVRGGRARHAASRY 864