BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021784
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]   102   4e-20
emb|CBI18929.3| unnamed protein product [Vitis vinifera]               95   5e-18
ref|XP_002890375.1| pentatricopeptide repeat-containing protein ...    85   7e-15
gb|AAF79892.1|AC022472_1 Contains similarity to an unknown prote...    84   9e-15

>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/85 (57%), Positives = 64/85 (75%)
 Frame = -3

Query: 256 PDVFSFSTLISACSKFNHFNSVLGALHKMLSHGLLPDSYIFPSALKACVGLLDVRIGREL 77
           P+VFSFSTLI A SKF+ F+  L    +ML+ GL+PD+ + PSA+KAC GL  ++  R++
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 76  HGLACVTGFAFDSFVHSSLVHMYIK 2
           HG+A V+GF  DSFV SSLVHMYIK
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIK 161


>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/85 (57%), Positives = 64/85 (75%)
 Frame = -3

Query: 256 PDVFSFSTLISACSKFNHFNSVLGALHKMLSHGLLPDSYIFPSALKACVGLLDVRIGREL 77
           P+VFSFSTLI A SKF+ F+  L    +ML+ GL+PD+ + PSA+KAC GL  ++  R++
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 76  HGLACVTGFAFDSFVHSSLVHMYIK 2
           HG+A V+GF  DSFV SSLVHMYIK
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIK 161


>emb|CBI18929.3| unnamed protein product [Vitis vinifera]
          Length = 387

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 45/83 (54%), Positives = 62/83 (74%)
 Frame = -3

Query: 256 PDVFSFSTLISACSKFNHFNSVLGALHKMLSHGLLPDSYIFPSALKACVGLLDVRIGREL 77
           P+VFSFSTLI A SKF+ F+  L    +ML+ GL+PD+ + PSA+KAC GL  ++  R++
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 76  HGLACVTGFAFDSFVHSSLVHMY 8
           HG+A V+GF  DSFV SSLVH++
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHIW 159


>ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336217|gb|EFH66634.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 760

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 37/92 (40%), Positives = 59/92 (64%)
 Frame = -3

Query: 277 IASTFLNPDVFSFSTLISACSKFNHFNSVLGALHKMLSHGLLPDSYIFPSALKACVGLLD 98
           I  +  +P V+SFS+LI A +K   F+  +G   +M SHGL+PD+++ P+  K C  L  
Sbjct: 72  ILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSA 131

Query: 97  VRIGRELHGLACVTGFAFDSFVHSSLVHMYIK 2
            + G+++H +ACV+G   D+FV  SL HMY++
Sbjct: 132 FKAGKQIHCVACVSGLDMDAFVQGSLFHMYMR 163


>gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 34/86 (39%), Positives = 57/86 (66%)
 Frame = -3

Query: 259 NPDVFSFSTLISACSKFNHFNSVLGALHKMLSHGLLPDSYIFPSALKACVGLLDVRIGRE 80
           +P ++SFS+LI A +K   F   +G   +M SHGL+PDS++ P+  K C  L   ++G++
Sbjct: 78  DPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQ 137

Query: 79  LHGLACVTGFAFDSFVHSSLVHMYIK 2
           +H ++CV+G   D+FV  S+ HMY++
Sbjct: 138 IHCVSCVSGLDMDAFVQGSMFHMYMR 163