BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021762
         (519 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]   112   2e-23
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec...   112   3e-23
ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation spec...   101   5e-20
ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation spec...    98   8e-19
ref|XP_004172408.1| PREDICTED: cleavage and polyadenylation spec...    92   6e-17

>emb|CAN61344.1| hypothetical protein VITISV_022201 [Vitis vinifera]
          Length = 299

 Score =  112 bits (281), Expect = 2e-23
 Identities = 72/180 (40%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
 Frame = -2

Query: 518 PPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAMGFNHGRPSQPGPFFPPNG---L 357
           PPD   M D F   PR F PYGPRFSGDF+     PA G       QPG  FP +G   +
Sbjct: 120 PPDGFAMPDIFGVGPRAFPPYGPRFSGDFTG----PASGMMFPGRGQPGAVFPASGYGMM 175

Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDANWAKKDQRRPTNDWNER 177
                                                    + N  K+DQR P ND N+R
Sbjct: 176 MGPGRAPFMGGMGVPAAAPTRAGRPVGMPPMFPPPPPPNSQNTNRTKRDQRTPVNDRNDR 235

Query: 176 HSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN--RSGDSESEDEAPRRSR 3
           +S G DQG+G +M       DDET+Y  G K Q  D FGGGN  R+ +SESEDEAPRRSR
Sbjct: 236 YSGGSDQGRGQDM----AGPDDETQYLQGLKSQQDDQFGGGNSFRNDESESEDEAPRRSR 291


>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Vitis vinifera]
          Length = 673

 Score =  112 bits (280), Expect = 3e-23
 Identities = 73/179 (40%), Positives = 85/179 (47%), Gaps = 7/179 (3%)
 Frame = -2

Query: 518  PPDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAMGFNHGRPSQPGPFFPPNGLXXX 348
            PPD   M D F   PR F PYGPRFSGDF+     PA G       QPG  FP +G    
Sbjct: 495  PPDGFAMPDIFGVGPRAFPPYGPRFSGDFTG----PASGMMFPGRGQPGAVFPASGYGMM 550

Query: 347  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDA--NWAKKDQRRPTNDWNERH 174
                                                 P++  N  K+DQR P ND N+R+
Sbjct: 551  MGPGRAPFMGGMGVPAAAPTRAGRPVGMPPMFPPPPPPNSQNNRTKRDQRTPVNDRNDRY 610

Query: 173  SAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN--RSGDSESEDEAPRRSR 3
            S G DQG+G +M       DDET+Y  G K Q  D FGGGN  R+ +SESEDEAPRRSR
Sbjct: 611  SGGSDQGRGQDM----AGPDDETQYLQGLKSQQDDQFGGGNSFRNDESESEDEAPRRSR 665


>ref|XP_003546247.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Glycine max]
          Length = 691

 Score =  101 bits (252), Expect = 5e-20
 Identities = 73/178 (41%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
 Frame = -2

Query: 515  PDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAMGFNHGRPSQPGPFFPPNGLXXXX 345
            PD   M D F   PR FAPYGPRFSGDF   G  PA     GRPSQPG  FP  G     
Sbjct: 510  PDGFGMPDLFGVGPRGFAPYGPRFSGDF---GGPPAAMMFRGRPSQPG-MFPSGGFGMMM 565

Query: 344  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDANW---AKKDQRRPTNDWNERH 174
                                                   N    AK+DQR  T D N+R 
Sbjct: 566  NPGRGPFMGGMGVGGANPPRGGRPVNMPPMFPPPPPLPQNANRAAKRDQR--TADRNDRF 623

Query: 173  SAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN-RSGDSESEDEAPRRSR 3
             +G +QGK  +M S SG  DD+ +YQ G+KG   D     N R+ DSESEDEAPRRSR
Sbjct: 624  GSGSEQGKSQDMLSQSGGPDDDAQYQQGYKGNQDDHPAVNNFRNDDSESEDEAPRRSR 681


>ref|XP_003534764.1| PREDICTED: cleavage and polyadenylation specificity factor
            CPSF30-like [Glycine max]
          Length = 681

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 71/177 (40%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
 Frame = -2

Query: 515  PDRLPMQDFF---PRPFAPYGPRFSGDFSAIGQNPAMGFNHGRPSQPGPFFPPNGLXXXX 345
            PD   M D F   PR FAPYGPRFSGDF   G  PA     GRPSQPG  FP  G     
Sbjct: 507  PDGFGMPDLFGVGPRGFAPYGPRFSGDF---GGPPAAMMFRGRPSQPG-MFPGGGFGMML 562

Query: 344  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDANW---AKKDQRRPTNDWNERH 174
                                                   N    AK+DQR  T D N+R 
Sbjct: 563  NPGRGPFMGGIGVGGANPPRGGRPVNMPPMFPPPPPLPQNANRAAKRDQR--TADRNDRF 620

Query: 173  SAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGNRSGDSESEDEAPRRSR 3
             +G +QGK  +M S SG  DD+ +YQ G+KG   D         DSESEDEAPRRSR
Sbjct: 621  GSGSEQGKSQDMLSQSGGPDDDPQYQQGYKGNQDD------HPDDSESEDEAPRRSR 671


>ref|XP_004172408.1| PREDICTED: cleavage and polyadenylation specificity factor
           CPSF30-like, partial [Cucumis sativus]
          Length = 331

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 71/182 (39%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
 Frame = -2

Query: 515 PDRLPMQDFF---PRPFAPYGP--RFSGDFSAIGQNPAMGFNHGRPSQPGPFFPPNGLXX 351
           PD  PM D F   PR F PYGP  RFSGDF  +G   AM F  GRPSQP   FPP+G   
Sbjct: 137 PDGFPMPDIFGMTPRGFGPYGPTPRFSGDF--MGPPTAMMFR-GRPSQPAAMFPPSGFGM 193

Query: 350 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDAN----WAKKDQRRPTNDWN 183
                                                 P +       K+DQR  TND  
Sbjct: 194 MMGQGRGPFMGGMGVAGANPARPGRPVGVSPLYPPPAVPSSQNMNRTIKRDQRGLTND-- 251

Query: 182 ERHSAGPDQGKGNEMESTSGARDDETRYQSGFKGQSKDLFGGGN--RSGDSESEDEAPRR 9
            R+  G DQ KG E++S+   RD+E +Y+ G K  S + +G G   R+ +SESEDEAPRR
Sbjct: 252 -RYIVGMDQNKGVEIQSSG--RDEEMQYKQGSKAYSDEQYGTGTTFRNEESESEDEAPRR 308

Query: 8   SR 3
           SR
Sbjct: 309 SR 310