BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021628
         (652 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38481.3| unnamed protein product [Vitis vinifera]              318   5e-85
ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containi...   272   3e-71
ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing prote...   253   3e-65
emb|CAB10423.1| hypothetical protein [Arabidopsis thaliana] gi|7...   253   3e-65
ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp....   246   3e-63

>emb|CBI38481.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  318 bits (815), Expect = 5e-85
 Identities = 147/216 (68%), Positives = 182/216 (84%)
 Frame = +3

Query: 3   DGYRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACG 182
           DG+RVF+KS  RN +TWT+LISGYG +GRV EV+ FF++M  EGF+P+YVTFLAV+SAC 
Sbjct: 245 DGHRVFNKSLNRNVITWTALISGYGQHGRVAEVLVFFSKMKTEGFRPNYVTFLAVISACS 304

Query: 183 HGGFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVW 362
           HGG V+EG  YF SM +DYGI+PR +HYA MVD+LGRAGRL EAFEFV+NSPC +HSV+W
Sbjct: 305 HGGLVNEGWEYFMSMTRDYGIQPRGQHYAAMVDLLGRAGRLHEAFEFVQNSPCGEHSVIW 364

Query: 363 GALLGACQIHGRLDLANVAAKKFFELAPENAGKYVVLSNTYAAYGLWKNVDKVREVMRES 542
           GALLGAC++HG +D+   AAKK+F+L PENAGKYVVLSN YA +GLW NV +VR VMRES
Sbjct: 365 GALLGACRVHGNIDMLRFAAKKYFDLEPENAGKYVVLSNAYATFGLWDNVAEVRGVMRES 424

Query: 543 GVKKEPSCSWIEIRREVHTFLVGDKSDTQSEQIYEM 650
           G++K+P  S IE++REVH FL+GDKS  Q+EQIYE+
Sbjct: 425 GMRKDPGYSRIEVQREVHFFLMGDKSHKQTEQIYEV 460



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%)
 Frame = +3

Query: 15  VFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACGHGGF 194
           +FD  S+++ ++W ++I+GY   G  +E +  ++ M + G  PD  TF +V  AC     
Sbjct: 148 LFDDLSKKSLISWNAMIAGYVQKGLEEEGLNLYDEMRQSGLTPDQYTFASVFRACATLAT 207

Query: 195 VSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVWGALL 374
           + +GK+  C MIK   IK  +   + ++DM  +   L +    V N    ++ + W AL+
Sbjct: 208 LEKGKQAHCVMIKSQ-IKENVVVNSALMDMYFKCSSLYDGHR-VFNKSLNRNVITWTALI 265

Query: 375 GACQIHGRL 401
                HGR+
Sbjct: 266 SGYGQHGRV 274


>ref|XP_004134800.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
           gi|449526397|ref|XP_004170200.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g16470-like [Cucumis sativus]
          Length = 486

 Score =  272 bits (696), Expect = 3e-71
 Identities = 122/214 (57%), Positives = 167/214 (78%)
 Frame = +3

Query: 3   DGYRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACG 182
           DG++ F+KSS RN +TWT+LISGYG +GR+ EV+E F+ MI +G++P+YVTFLAVL+AC 
Sbjct: 242 DGHKAFNKSSNRNVITWTALISGYGQHGRISEVLESFHSMINKGYRPNYVTFLAVLAACS 301

Query: 183 HGGFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVW 362
            GGFVSE   YF  M K YGI+PR +HYA M D+L RAGRL EA++FV ++PC++HSV+W
Sbjct: 302 RGGFVSEAWNYFSLMTKTYGIEPRGQHYAAMADLLARAGRLQEAYDFVLDAPCKEHSVMW 361

Query: 363 GALLGACQIHGRLDLANVAAKKFFELAPENAGKYVVLSNTYAAYGLWKNVDKVREVMRES 542
           GAL+GAC++H  +DL    A  +FEL P+N+GK VV SN +A  GLW NV+++R +M++S
Sbjct: 362 GALVGACKVHEDVDLMKHVAASYFELDPKNSGKLVVFSNAFATSGLWDNVEEIRAMMKKS 421

Query: 543 GVKKEPSCSWIEIRREVHTFLVGDKSDTQSEQIY 644
           G+ K+P CS IEI+RE H F+ GDKS  ++E+IY
Sbjct: 422 GMSKDPGCSRIEIQREFHIFVKGDKSHRETEEIY 455



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 39/131 (29%), Positives = 64/131 (48%)
 Frame = +3

Query: 9   YRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACGHG 188
           Y + +   E++ V+W SLI+GY   G  +  +EF+ +M + G  PD  TF +VL AC   
Sbjct: 143 YVLHEHLLEKSLVSWNSLIAGYVQKGLAEVGLEFYLKMRQSGLMPDQYTFASVLRACASL 202

Query: 189 GFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVWGA 368
             +  GKR    +IK   I   +   + +VDM  +   L +  +   N    ++ + W A
Sbjct: 203 ASLEHGKRAHGVLIK-CQIGDNVVVSSALVDMYFKCSSLSDGHK-AFNKSSNRNVITWTA 260

Query: 369 LLGACQIHGRL 401
           L+     HGR+
Sbjct: 261 LISGYGQHGRI 271


>ref|NP_193380.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana] gi|223635634|sp|O23491.2|PP315_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g16470 gi|332658358|gb|AEE83758.1| pentatricopeptide
           (PPR) repeat-containing protein [Arabidopsis thaliana]
          Length = 501

 Score =  253 bits (645), Expect = 3e-65
 Identities = 122/215 (56%), Positives = 157/215 (73%)
 Frame = +3

Query: 3   DGYRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACG 182
           DG+RVFD+ S RN +TWTSLISGYG++G+V EV++ F +M +EG +P+ VTFL VL+AC 
Sbjct: 262 DGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACN 321

Query: 183 HGGFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVW 362
           HGG V +G  +F SM +DYGI+P  +HYA MVD LGRAGRL EA+EFV  SPC++H  VW
Sbjct: 322 HGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVW 381

Query: 363 GALLGACQIHGRLDLANVAAKKFFELAPENAGKYVVLSNTYAAYGLWKNVDKVREVMRES 542
           G+LLGAC+IHG + L  +AA KF EL P N G YVV +N YA+ GL +   KVR  M  +
Sbjct: 382 GSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENA 441

Query: 543 GVKKEPSCSWIEIRREVHTFLVGDKSDTQSEQIYE 647
           GVKK+P  S IE++ EVH F+  D S   SE+IY+
Sbjct: 442 GVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYK 476


>emb|CAB10423.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268397|emb|CAB78689.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 459

 Score =  253 bits (645), Expect = 3e-65
 Identities = 122/215 (56%), Positives = 157/215 (73%)
 Frame = +3

Query: 3   DGYRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACG 182
           DG+RVFD+ S RN +TWTSLISGYG++G+V EV++ F +M +EG +P+ VTFL VL+AC 
Sbjct: 220 DGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACN 279

Query: 183 HGGFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVW 362
           HGG V +G  +F SM +DYGI+P  +HYA MVD LGRAGRL EA+EFV  SPC++H  VW
Sbjct: 280 HGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVW 339

Query: 363 GALLGACQIHGRLDLANVAAKKFFELAPENAGKYVVLSNTYAAYGLWKNVDKVREVMRES 542
           G+LLGAC+IHG + L  +AA KF EL P N G YVV +N YA+ GL +   KVR  M  +
Sbjct: 340 GSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENA 399

Query: 543 GVKKEPSCSWIEIRREVHTFLVGDKSDTQSEQIYE 647
           GVKK+P  S IE++ EVH F+  D S   SE+IY+
Sbjct: 400 GVKKDPGYSQIELQGEVHRFMKDDTSHRLSEKIYK 434


>ref|XP_002868131.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313967|gb|EFH44390.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 484

 Score =  246 bits (627), Expect = 3e-63
 Identities = 119/215 (55%), Positives = 155/215 (72%)
 Frame = +3

Query: 3   DGYRVFDKSSERNAVTWTSLISGYGHNGRVDEVIEFFNRMIKEGFKPDYVTFLAVLSACG 182
           DG++VFD+ S RN VTWTSL+SGYG++G+V EV++ F +M +EG +P+ VTFL VL+AC 
Sbjct: 245 DGHKVFDQLSTRNVVTWTSLMSGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACN 304

Query: 183 HGGFVSEGKRYFCSMIKDYGIKPRLKHYATMVDMLGRAGRLDEAFEFVENSPCEKHSVVW 362
           HGG V +G  +F SM +DYGI+P  +HYA MVD LGRAGRL EA+EFV  SPC++H+ VW
Sbjct: 305 HGGLVDKGWEHFNSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHAPVW 364

Query: 363 GALLGACQIHGRLDLANVAAKKFFELAPENAGKYVVLSNTYAAYGLWKNVDKVREVMRES 542
           G+LLGAC+IHG + L  +AA KF EL P N G YVV +N YA+ G      KVR  M  +
Sbjct: 365 GSLLGACRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGFRDAASKVRRRMENA 424

Query: 543 GVKKEPSCSWIEIRREVHTFLVGDKSDTQSEQIYE 647
           GVKK+P  S IE++ EVH F+  D S   S +IY+
Sbjct: 425 GVKKDPGYSQIELQGEVHRFMKDDTSHKLSVKIYK 459