BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021587
         (1069 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521673.1| pentatricopeptide repeat-containing protein,...   369   e-100
ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   359   7e-97
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   358   1e-96
ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi...   357   2e-96
ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containi...   350   4e-94

>ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223539064|gb|EEF40660.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 341

 Score =  369 bits (948), Expect = e-100
 Identities = 185/303 (61%), Positives = 234/303 (77%), Gaps = 2/303 (0%)
 Frame = -3

Query: 1067 RGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYINRATEMLFSM-REYNCWP 894
            + K +DAI+D+++RIK EK+C LS+ FFY VI+IYG+ AG I  A + LF M R YNCWP
Sbjct: 42   QAKNFDAIEDIMQRIKLEKSCRLSNGFFYNVIKIYGHLAGRIKVAIDTLFDMPRGYNCWP 101

Query: 893  TIRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALL 714
             ++TFN VLN+LVSA+ FD++H++Y  AP LG+EID CCLNILIKGLCE+  L+AAF +L
Sbjct: 102  DVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLNILIKGLCENGDLEAAFYVL 161

Query: 713  DEFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQ 534
            DEFPK  C+PNVRT+STLM++LC    V++AF L +RME  G++ DTITFN LISGL K+
Sbjct: 162  DEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTITFNILISGLRKR 221

Query: 533  GRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSY 354
            GR+ EG+ELL KM+LKGCEPN GSYQ VLYGLLD+ KF EAK  MD+M+  G  PSF SY
Sbjct: 222  GRIEEGMELLVKMKLKGCEPNAGSYQEVLYGLLDAGKFSEAKDFMDRMVCEGNGPSFVSY 281

Query: 353  KLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQIISTSVSQCQFSEL 174
            K +I GLC E L+G+VD VLK+ML+QGFVP+MGMWK I+ SM SE    TS+    FS++
Sbjct: 282  KKLIDGLCKEKLIGEVDCVLKQMLKQGFVPKMGMWKHIVGSMLSESGDCTSIC---FSQV 338

Query: 173  AKG 165
              G
Sbjct: 339  IGG 341



 Score = 80.5 bits (197), Expect = 7e-13
 Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 8/228 (3%)
 Frame = -3

Query: 896 PTIRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLN-------ILIKGLCESDR 738
           P    +  V+N L  AK FD I  +     R+ LE  +C L+       I I G   + R
Sbjct: 28  PNEALYTLVINKLAQAKNFDAIEDI---MQRIKLE-KSCRLSNGFFYNVIKIYGHL-AGR 82

Query: 737 LDAAFALLDEFPK-LHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFN 561
           +  A   L + P+  +C P+V+T++ ++N L      D   E+ E+    GV+ D    N
Sbjct: 83  IKVAIDTLFDMPRGYNCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLN 142

Query: 560 TLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISM 381
            LI GLC+ G +     +LD+   + C+PN  ++  +++ L    +  +A  L+D+M + 
Sbjct: 143 ILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENE 202

Query: 380 GVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 237
           G+     ++ ++I GL     + +   +L KM  +G  P  G ++++L
Sbjct: 203 GIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVL 250


>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
            predicted protein [Populus trichocarpa]
          Length = 326

 Score =  359 bits (921), Expect = 7e-97
 Identities = 173/272 (63%), Positives = 219/272 (80%), Gaps = 2/272 (0%)
 Frame = -3

Query: 1067 RGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYINRATEMLFSM-REYNCWP 894
            + K +DAI+D++++IK +K+C LS+DFF+ VI+IYG  AG I +A E LF M + YNCWP
Sbjct: 55   QAKNFDAIEDIMQKIKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWP 114

Query: 893  TIRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALL 714
             +++FN VLN+LVSAK FD++H+VYL AP LG+EID C LNILIKGLCE+  L+AAF +L
Sbjct: 115  NVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVL 174

Query: 713  DEFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQ 534
            DEFPK  CEPNVRT+STLM+ LCK  +VDEAF L ERME+ G+D DTITFN LISGL KQ
Sbjct: 175  DEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKEGIDADTITFNILISGLRKQ 234

Query: 533  GRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSY 354
            G+V EG+ELL++M +KGCEPN GSYQ +LYGLLD++K++E K  M +MI  GV PSF SY
Sbjct: 235  GKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSY 294

Query: 353  KLVIHGLCNENLLGDVDLVLKKMLRQGFVPRM 258
            K ++HGLC E LL D+D VLK+M RQGFVP+M
Sbjct: 295  KKLVHGLCKERLLRDLDWVLKQMARQGFVPKM 326



 Score = 84.3 bits (207), Expect = 5e-14
 Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 8/235 (3%)
 Frame = -3

Query: 896 PTIRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCC------LNILIKGLCE-SDR 738
           P    +  V+N L  AK FD I  +        +++D  C       + +IK   + + R
Sbjct: 41  PNEALYTQVINKLAQAKNFDAIEDIMQK-----IKLDKSCRLSNDFFHNVIKIYGQLAGR 95

Query: 737 LDAAFALLDEFPK-LHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFN 561
           +  A   L + PK  +C PNV++++ ++N L      D   E+  +    G++ D  + N
Sbjct: 96  IKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSLN 155

Query: 560 TLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISM 381
            LI GLC+ G +     +LD+   + CEPN  ++  +++GL    K  EA  L+++M   
Sbjct: 156 ILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKE 215

Query: 380 GVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQ 216
           G+     ++ ++I GL  +  + +   +L++M  +G  P  G +++IL  +   +
Sbjct: 216 GIDADTITFNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAE 270


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  358 bits (919), Expect = 1e-96
 Identities = 171/293 (58%), Positives = 225/293 (76%), Gaps = 1/293 (0%)
 Frame = -3

Query: 1067 RGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYINRATEMLFSMREYNCWPT 891
            + + +DAI+DV+K +K +K C LSD FFY VI++YGN AG  +RA E LF M +++CWP+
Sbjct: 97   QARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGRPDRAVETLFDMPKFHCWPS 156

Query: 890  IRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALLD 711
            ++TFN VLN+LVSAK+FD++H+VY GAP LG+EID CCLNIL+KGLC S  +DAA  LLD
Sbjct: 157  VKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLD 216

Query: 710  EFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQG 531
            E+PK  C PNVRT+STLM+ LC+  RV+ A  L ERME+ GV PDT+ FN LISGL K+G
Sbjct: 217  EYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMEREGVYPDTVVFNILISGLRKRG 276

Query: 530  RVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYK 351
            RV EG+ELL +M+LKGC PN GSYQ VLYG+LD+ +F +AK  M +MI  GV PSF SYK
Sbjct: 277  RVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSYK 336

Query: 350  LVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQIISTSVSQ 192
            +VI+GLC ENL+ DV  +LK+M+ QGFVP   MW++IL++MF   +  + + +
Sbjct: 337  MVIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQTMFPRNVSQSEIME 389


>ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
            mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  357 bits (917), Expect = 2e-96
 Identities = 170/293 (58%), Positives = 225/293 (76%), Gaps = 1/293 (0%)
 Frame = -3

Query: 1067 RGKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYINRATEMLFSMREYNCWPT 891
            + + +DAI+DV+K +K +K C LSD FFY VI++YGN AG  +RA E LF M +++CWP+
Sbjct: 97   QARMFDAIEDVIKTLKIDKQCRLSDVFFYNVIKVYGNVAGQPDRAVETLFDMPKFHCWPS 156

Query: 890  IRTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALLD 711
            ++TFN VLN+LVSAK+FD++H+VY GAP LG+EID CCLNIL+KGLC S  +DAA  LLD
Sbjct: 157  VKTFNLVLNMLVSAKRFDVVHKVYAGAPELGVEIDACCLNILVKGLCRSGNVDAACELLD 216

Query: 710  EFPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQG 531
            E+PK  C PNVRT+STLM+ LC+  RV+ A  L ERME+ GV PDT+ FN LISGL K+G
Sbjct: 217  EYPKQRCRPNVRTFSTLMHGLCESGRVEGALGLLERMEREGVYPDTVVFNILISGLRKRG 276

Query: 530  RVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYK 351
            RV EG+ELL +M+LKGC PN GSYQ VLYG+LD+ +F +AK  M +MI  GV PSF SYK
Sbjct: 277  RVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLDTGRFGKAKEFMCQMIDEGVSPSFVSYK 336

Query: 350  LVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQIISTSVSQ 192
            ++I+GLC ENL+ DV  +LK+M+ QGFVP   MW++IL++MF   +  + + +
Sbjct: 337  MMIYGLCKENLVADVVWILKQMVEQGFVPERWMWRRILQTMFPRNVSQSEIME 389


>ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
            mitochondrial-like [Cucumis sativus]
            gi|449503658|ref|XP_004162112.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g14580,
            mitochondrial-like [Cucumis sativus]
          Length = 411

 Score =  350 bits (897), Expect = 4e-94
 Identities = 168/282 (59%), Positives = 217/282 (76%), Gaps = 1/282 (0%)
 Frame = -3

Query: 1064 GKKYDAIDDVLKRIKNEKTCMLSDDFFYGVIRIYGN-AGYINRATEMLFSMREYNCWPTI 888
            G+ +D I+ V+ RIK E+   LSD+FFY VI+IYGN AG +N+A + LF M  YNCWP++
Sbjct: 104  GRLFDDIEKVMLRIKAERNFRLSDEFFYHVIKIYGNVAGRLNKAIDTLFDMPNYNCWPSV 163

Query: 887  RTFNCVLNILVSAKQFDIIHQVYLGAPRLGLEIDTCCLNILIKGLCESDRLDAAFALLDE 708
            +TFN VLN+LVSAK FD++H+VY+GAP+LG+EID CCLNIL+KGLC+S  LDAA  +LDE
Sbjct: 164  KTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDE 223

Query: 707  FPKLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQGR 528
            FP+  C PNVRT+STL++ LC++  +  A EL  +ME  GV PDTITFN LISGL K+ R
Sbjct: 224  FPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMENEGVCPDTITFNILISGLRKKKR 283

Query: 527  VAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYKL 348
            + E +ELL +M+LKGC PN G+YQ VLYGLLD+ KF+EA+  M +MIS G+ PSF SYK 
Sbjct: 284  IEEAIELLGRMKLKGCYPNAGTYQEVLYGLLDTGKFIEARDCMHRMISEGMDPSFVSYKK 343

Query: 347  VIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFS 222
            ++ GLC + L  DVD VLK+M+ QGFVP++GMWK IL  M S
Sbjct: 344  LLSGLCKKKLTEDVDWVLKQMVMQGFVPKVGMWKVILRCMLS 385