BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021555
         (728 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   234   1e-80
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   219   1e-78
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   219   1e-77
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...   218   6e-75
ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group] g...   189   5e-69

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  234 bits (596), Expect(2) = 1e-80
 Identities = 110/166 (66%), Positives = 133/166 (80%)
 Frame = -1

Query: 500 DQAVTCFTKMLEKNISVDADLLEVLVNGLCSNKKVEGAYTLVIEMVDKANLRPWQATYKN 321
           D+A+ CF KM+EKN   DADLLEVL+NG  S K+++GAY L++EMV+ A+L PWQATYK 
Sbjct: 459 DKALICFAKMMEKNCDADADLLEVLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKL 518

Query: 320 LIQKLLGERRLEEAFKILWLMRKHNFPPFPEPFIDYISKCGTVEDAIEFLKVLSVKQYPS 141
           +I KLLG R+LEEA  +L LM+K N+PPFPEPFI+YISK GTVEDA EFL  LS K+YPS
Sbjct: 519 MINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPS 578

Query: 140 SSAYLHVLESFIKEGRMSEARDLLYKCPHHIRNHADILNLFASLRT 3
            SAY+HV ESF +EGR SEA+DLLYKCPHHIR H DI  LF S ++
Sbjct: 579 QSAYVHVFESFFQEGRESEAKDLLYKCPHHIRKHPDICKLFGSAKS 624



 Score = 92.8 bits (229), Expect(2) = 1e-80
 Identities = 41/52 (78%), Positives = 48/52 (92%)
 Frame = -2

Query: 727 EPDNITYSQLVFGLCKAGRMEEAREMLDKMEAQGCVPDMKTWTILIQGHCTA 572
           EPDNITYSQLV+GLCKA ++EEA ++LD+MEA GCVPD+KTWTILIQGHC A
Sbjct: 404 EPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAA 455


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  219 bits (558), Expect(2) = 1e-78
 Identities = 102/163 (62%), Positives = 128/163 (78%)
 Frame = -1

Query: 500 DQAVTCFTKMLEKNISVDADLLEVLVNGLCSNKKVEGAYTLVIEMVDKANLRPWQATYKN 321
           D A+ CF KM+EKN   DADLL+VL++G  + KK+ GAY L+IE+ +KA++RPWQATYK 
Sbjct: 452 DIALVCFAKMIEKNCDPDADLLDVLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQ 511

Query: 320 LIQKLLGERRLEEAFKILWLMRKHNFPPFPEPFIDYISKCGTVEDAIEFLKVLSVKQYPS 141
           LI+ LL  R+LEEA  +L LM+K N+PPFPEPF+ YISK GTV+DA +FLKVLS K+YPS
Sbjct: 512 LIKNLLEVRKLEEAIALLRLMKKQNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPS 571

Query: 140 SSAYLHVLESFIKEGRMSEARDLLYKCPHHIRNHADILNLFAS 12
            SAYLH+  SF  EGR SEA+DLL+KCPHHIR H ++  LF S
Sbjct: 572 VSAYLHIFNSFFNEGRYSEAKDLLFKCPHHIRKHNEVCKLFGS 614



 Score =  100 bits (249), Expect(2) = 1e-78
 Identities = 43/54 (79%), Positives = 51/54 (94%)
 Frame = -2

Query: 727 EPDNITYSQLVFGLCKAGRMEEAREMLDKMEAQGCVPDMKTWTILIQGHCTAGK 566
           EPDN+TYSQLVFGLCKA R+EEAR++LD+MEAQGC+PD+KTWTILIQGHC A +
Sbjct: 397 EPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANE 450


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  219 bits (559), Expect(2) = 1e-77
 Identities = 103/165 (62%), Positives = 130/165 (78%)
 Frame = -1

Query: 497 QAVTCFTKMLEKNISVDADLLEVLVNGLCSNKKVEGAYTLVIEMVDKANLRPWQATYKNL 318
           +A+ C  KM+EK+   DADLL VL+N   S K+++GAYTL ++MVDKA LRPWQATYK L
Sbjct: 458 KALMCLAKMMEKHCDPDADLLAVLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLL 517

Query: 317 IQKLLGERRLEEAFKILWLMRKHNFPPFPEPFIDYISKCGTVEDAIEFLKVLSVKQYPSS 138
           I+KLL  R+LEEA  +L LM++HN PPFPEPF+ YIS+ GTV+DA +FLK LSVK+YPS+
Sbjct: 518 IEKLLEVRKLEEALNLLRLMKQHNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEYPST 577

Query: 137 SAYLHVLESFIKEGRMSEARDLLYKCPHHIRNHADILNLFASLRT 3
           SAYL+V +SF + GR SEA+DLL+KCPHHIR H  I  LF S +T
Sbjct: 578 SAYLNVFQSFFRAGRHSEAKDLLFKCPHHIRKHPKISELFGSAKT 622



 Score = 96.7 bits (239), Expect(2) = 1e-77
 Identities = 43/54 (79%), Positives = 49/54 (90%)
 Frame = -2

Query: 727 EPDNITYSQLVFGLCKAGRMEEAREMLDKMEAQGCVPDMKTWTILIQGHCTAGK 566
           EPDNITYSQLVFGLCKA R+EEA E+LD+MEA GC+PD+KTWTILIQGHC A +
Sbjct: 402 EPDNITYSQLVFGLCKARRLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANE 455


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  218 bits (554), Expect(2) = 6e-75
 Identities = 106/166 (63%), Positives = 128/166 (77%)
 Frame = -1

Query: 500 DQAVTCFTKMLEKNISVDADLLEVLVNGLCSNKKVEGAYTLVIEMVDKANLRPWQATYKN 321
           D+ + C  KM EKN   DADLL+VLV G  S +K++GAYT ++EMV+K  L PWQATYK 
Sbjct: 306 DKGLLCLVKMTEKNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKL 365

Query: 320 LIQKLLGERRLEEAFKILWLMRKHNFPPFPEPFIDYISKCGTVEDAIEFLKVLSVKQYPS 141
           LI+KLL  R+LEEA  +L LM+KHN+PPFPEPF  YISK GTVEDA+ F KVLSVK+YPS
Sbjct: 366 LIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEYPS 425

Query: 140 SSAYLHVLESFIKEGRMSEARDLLYKCPHHIRNHADILNLFASLRT 3
           S AYL +L+SF++EGR SEARDLL+KCPHHIR    I  LF S +T
Sbjct: 426 SVAYLRMLDSFLREGRDSEARDLLFKCPHHIRKDHKISKLFGSAKT 471



 Score = 89.7 bits (221), Expect(2) = 6e-75
 Identities = 40/54 (74%), Positives = 48/54 (88%)
 Frame = -2

Query: 727 EPDNITYSQLVFGLCKAGRMEEAREMLDKMEAQGCVPDMKTWTILIQGHCTAGK 566
           EPDNITYSQLVFGLCK+ R+EEA ++LD+MEA GC+PD+KTWTILIQGH  A +
Sbjct: 251 EPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHFAANQ 304


>ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
           gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR)
           repeat-containing protein -like [Oryza sativa Japonica
           Group] gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza
           sativa Japonica Group] gi|125573469|gb|EAZ14984.1|
           hypothetical protein OsJ_04919 [Oryza sativa Japonica
           Group] gi|215678751|dbj|BAG95188.1| unnamed protein
           product [Oryza sativa Japonica Group]
           gi|215693250|dbj|BAG88632.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 573

 Score =  189 bits (481), Expect(2) = 5e-69
 Identities = 90/166 (54%), Positives = 123/166 (74%), Gaps = 1/166 (0%)
 Frame = -1

Query: 500 DQAVTCFTKMLEKNISVDADLLEVLVNGLCSNKKVEGAYTLVIEMVDKANLRPWQATYKN 321
           ++A+  FT+M+EKN+  DA LL+V+V GLCS+ K++ +Y   +EMVDKANL PWQ TYK+
Sbjct: 401 EKALQYFTEMVEKNLEADAALLDVMVKGLCSDDKIDASYAFFVEMVDKANLSPWQGTYKH 460

Query: 320 LIQKLLGERRLEEAFKILWLMRKHNFPPFPEPFIDYISKCGTVEDAIEFLKVLSV-KQYP 144
           +I +LL  ++LEEA  +L  M+   FPPF +PF  +I+K GT +DA +FLK L+V  +YP
Sbjct: 461 IIGELLRVKKLEEALGLLRSMKARKFPPFADPFPTHIAKYGTFDDARQFLKALTVNNKYP 520

Query: 143 SSSAYLHVLESFIKEGRMSEARDLLYKCPHHIRNHADILNLFASLR 6
           S +AYLHV +SF  EGR SEA+DLLYKCP HIR H D+  LF S++
Sbjct: 521 SPTAYLHVFKSFFTEGRYSEAQDLLYKCPFHIRKHPDVTELFESIK 566



 Score = 98.2 bits (243), Expect(2) = 5e-69
 Identities = 41/54 (75%), Positives = 50/54 (92%)
 Frame = -2

Query: 727 EPDNITYSQLVFGLCKAGRMEEAREMLDKMEAQGCVPDMKTWTILIQGHCTAGK 566
           +PDNITYSQL+FGLCKA R +EAR+ LD+MEA+GCVPD+KTWT+LIQGHC AG+
Sbjct: 346 QPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQGHCAAGE 399