BLASTX nr result

ID: Coptis24_contig00021543 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021543
         (538 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264489.1| PREDICTED: uncharacterized protein LOC100248...   169   3e-40
gb|AAM67126.1| unknown [Arabidopsis thaliana]                         164   8e-39
gb|ABK94626.1| unknown [Populus trichocarpa]                          164   1e-38
gb|ABK96481.1| unknown [Populus trichocarpa x Populus deltoides]      162   3e-38
ref|XP_002319758.1| predicted protein [Populus trichocarpa] gi|2...   161   5e-38

>ref|XP_002264489.1| PREDICTED: uncharacterized protein LOC100248442 [Vitis vinifera]
           gi|296088754|emb|CBI38204.3| unnamed protein product
           [Vitis vinifera]
          Length = 130

 Score =  169 bits (427), Expect = 3e-40
 Identities = 81/120 (67%), Positives = 96/120 (80%), Gaps = 2/120 (1%)
 Frame = -1

Query: 469 AKLTISCWIILLCLL--FHTAFAKTKSPRPISDTEVREKKNNCYADIQSGLWGRECKYSK 296
           +K  I  +++LL +L  F  +   +KS RPISD+E+REKKN CYADI+SGLWG +CK S 
Sbjct: 11  SKTLIFSFLLLLAVLLSFAPSPVLSKSRRPISDSEIREKKNECYADIESGLWGWQCKSSV 70

Query: 295 IATENCALNCLSPVCYTLVYESDPLEEGERDHVRSQEYKYCMHRVSMGESLEGVKGSFDY 116
           IA ENC L CLSP CY LVYESDPLEEGE+D  RSQEYKYCMHR+S+GESL+GVKGSFDY
Sbjct: 71  IAKENCVLQCLSPPCYELVYESDPLEEGEKDFTRSQEYKYCMHRLSLGESLDGVKGSFDY 130


>gb|AAM67126.1| unknown [Arabidopsis thaliana]
          Length = 121

 Score =  164 bits (415), Expect = 8e-39
 Identities = 74/116 (63%), Positives = 92/116 (79%)
 Frame = -1

Query: 469 AKLTISCWIILLCLLFHTAFAKTKSPRPISDTEVREKKNNCYADIQSGLWGRECKYSKIA 290
           A+ +  C ++LL  +F      +KSPRPISD E+R+KK+ CY DI+SGLWG +CK S IA
Sbjct: 6   ARSSFVCLLLLLLSMFFVPCVFSKSPRPISDVEIRQKKSECYGDIESGLWGWQCKSSAIA 65

Query: 289 TENCALNCLSPVCYTLVYESDPLEEGERDHVRSQEYKYCMHRVSMGESLEGVKGSF 122
            ENCAL CLSPVCY L+YESDPLEEGE+D +RSQEYKYCM++ S+GESLEGV+G F
Sbjct: 66  KENCALRCLSPVCYQLIYESDPLEEGEKDLIRSQEYKYCMYKSSLGESLEGVRGIF 121


>gb|ABK94626.1| unknown [Populus trichocarpa]
          Length = 129

 Score =  164 bits (414), Expect = 1e-38
 Identities = 72/113 (63%), Positives = 92/113 (81%)
 Frame = -1

Query: 457 ISCWIILLCLLFHTAFAKTKSPRPISDTEVREKKNNCYADIQSGLWGRECKYSKIATENC 278
           ++ + +L+ L  + +   +KSPRPI+D EVR+ KN CYADI+SGLWG++CK S  A ENC
Sbjct: 16  LTFFFLLVLLFINPSSVLSKSPRPITDVEVRQIKNECYADIESGLWGQQCKTSMTAKENC 75

Query: 277 ALNCLSPVCYTLVYESDPLEEGERDHVRSQEYKYCMHRVSMGESLEGVKGSFD 119
           AL CLSP+CY L+YESDPLEEGE+D  RSQEYKYCM++ SMGESLEG+KG+FD
Sbjct: 76  ALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKKSMGESLEGIKGAFD 128


>gb|ABK96481.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 129

 Score =  162 bits (410), Expect = 3e-38
 Identities = 71/113 (62%), Positives = 92/113 (81%)
 Frame = -1

Query: 457 ISCWIILLCLLFHTAFAKTKSPRPISDTEVREKKNNCYADIQSGLWGRECKYSKIATENC 278
           ++ + +L+ L  + +   +KSPRPI+D EVR+ KN CYADI+SGLWG++CK S  A ENC
Sbjct: 16  LTFFFLLVLLFINPSSVLSKSPRPITDVEVRQIKNECYADIESGLWGQQCKTSMTAKENC 75

Query: 277 ALNCLSPVCYTLVYESDPLEEGERDHVRSQEYKYCMHRVSMGESLEGVKGSFD 119
           AL CLSP+CY L+YESDPLEEGE+D  RSQEYKYCM++ S+GESLEG+KG+FD
Sbjct: 76  ALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKKSVGESLEGIKGAFD 128


>ref|XP_002319758.1| predicted protein [Populus trichocarpa] gi|222858134|gb|EEE95681.1|
           predicted protein [Populus trichocarpa]
          Length = 115

 Score =  161 bits (408), Expect = 5e-38
 Identities = 71/112 (63%), Positives = 91/112 (81%)
 Frame = -1

Query: 457 ISCWIILLCLLFHTAFAKTKSPRPISDTEVREKKNNCYADIQSGLWGRECKYSKIATENC 278
           ++ + +L+ L  + +   +KSPRPI+D EVR+ KN CYADI+SGLWG++CK S  A ENC
Sbjct: 4   LTFFFLLVLLFINPSSVLSKSPRPITDVEVRQIKNECYADIESGLWGQQCKTSMTAKENC 63

Query: 277 ALNCLSPVCYTLVYESDPLEEGERDHVRSQEYKYCMHRVSMGESLEGVKGSF 122
           AL CLSP+CY L+YESDPLEEGE+D  RSQEYKYCM++ SMGESLEG+KG+F
Sbjct: 64  ALKCLSPICYELIYESDPLEEGEKDFTRSQEYKYCMYKKSMGESLEGIKGAF 115


Top