BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021537
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycin...   212   3e-53
ref|XP_003537110.1| PREDICTED: photosystem II reaction center PS...   211   4e-53
ref|XP_002526538.1| Photosystem II reaction center W protein, pu...   209   2e-52
ref|NP_001151243.1| photosystem II reaction center W protein [Ze...   209   2e-52
gb|ACG27463.1| photosystem II reaction center W protein [Zea mays]    209   2e-52

>ref|NP_001235805.1| uncharacterized protein LOC100306491 [Glycine max]
           gi|255628701|gb|ACU14695.1| unknown [Glycine max]
          Length = 179

 Score =  212 bits (539), Expect = 3e-53
 Identities = 100/114 (87%), Positives = 111/114 (97%)
 Frame = -3

Query: 398 MAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEITGFYMIDE 219
           M KP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF++PSVFDS+GE+G+ITGFYMIDE
Sbjct: 66  MVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDITGFYMIDE 125

Query: 218 EGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIKK 57
           EGVLQSVDV+AKF+NGKPS IEAKY+MR+PRDWDRFMRFMERYS+ANGLQFIKK
Sbjct: 126 EGVLQSVDVSAKFVNGKPSIIEAKYVMRSPRDWDRFMRFMERYSNANGLQFIKK 179


>ref|XP_003537110.1| PREDICTED: photosystem II reaction center PSB28 protein,
           chloroplastic-like [Glycine max]
          Length = 179

 Score =  211 bits (538), Expect = 4e-53
 Identities = 99/114 (86%), Positives = 112/114 (98%)
 Frame = -3

Query: 398 MAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEITGFYMIDE 219
           MAKP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF++PSVFDS+GE+G+ITGFYMIDE
Sbjct: 66  MAKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDITGFYMIDE 125

Query: 218 EGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIKK 57
           EGVLQSVDV+AKF+NGKPS IEAKY+MR+PR+WDRFMRFMERYS+ANGLQF+KK
Sbjct: 126 EGVLQSVDVSAKFVNGKPSIIEAKYVMRSPREWDRFMRFMERYSNANGLQFVKK 179


>ref|XP_002526538.1| Photosystem II reaction center W protein, putative [Ricinus
           communis] gi|223534099|gb|EEF35816.1| Photosystem II
           reaction center W protein, putative [Ricinus communis]
          Length = 178

 Score =  209 bits (531), Expect = 2e-52
 Identities = 97/113 (85%), Positives = 111/113 (98%)
 Frame = -3

Query: 398 MAKPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEITGFYMIDE 219
           MAKP IQFIQGTDEQTIPDVRLTKSRDGTNG+AIFTF+EPSVFDS+ ELG+ITGFYMIDE
Sbjct: 65  MAKPSIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFTFDEPSVFDSSAELGDITGFYMIDE 124

Query: 218 EGVLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIK 60
           EGVLQSVDV+AKF+NGKP++IEAKY+MR+PR+WDRFMRFMERY++ANGLQF+K
Sbjct: 125 EGVLQSVDVSAKFVNGKPARIEAKYVMRSPREWDRFMRFMERYANANGLQFVK 177


>ref|NP_001151243.1| photosystem II reaction center W protein [Zea mays]
           gi|195645280|gb|ACG42108.1| photosystem II reaction
           center W protein [Zea mays] gi|224035967|gb|ACN37059.1|
           unknown [Zea mays] gi|414878789|tpg|DAA55920.1| TPA:
           photosystem II reaction center psb28 protein [Zea mays]
          Length = 179

 Score =  209 bits (531), Expect = 2e-52
 Identities = 97/111 (87%), Positives = 108/111 (97%)
 Frame = -3

Query: 392 KPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEITGFYMIDEEG 213
           +P IQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFE+PSVFDS+ ELG+ITGFYMID+EG
Sbjct: 68  RPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEG 127

Query: 212 VLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIK 60
           VLQSVDV+AKF+NGKP++IEAKY+MRTPRDWDRFMRFMERYS ANGLQF+K
Sbjct: 128 VLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMERYSQANGLQFVK 178


>gb|ACG27463.1| photosystem II reaction center W protein [Zea mays]
          Length = 180

 Score =  209 bits (531), Expect = 2e-52
 Identities = 97/111 (87%), Positives = 108/111 (97%)
 Frame = -3

Query: 392 KPVIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEEPSVFDSTGELGEITGFYMIDEEG 213
           +P IQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFE+PSVFDS+ ELG+ITGFYMID+EG
Sbjct: 69  RPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFEQPSVFDSSAELGDITGFYMIDDEG 128

Query: 212 VLQSVDVNAKFINGKPSKIEAKYIMRTPRDWDRFMRFMERYSDANGLQFIK 60
           VLQSVDV+AKF+NGKP++IEAKY+MRTPRDWDRFMRFMERYS ANGLQF+K
Sbjct: 129 VLQSVDVSAKFVNGKPARIEAKYVMRTPRDWDRFMRFMERYSQANGLQFVK 179