BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021533
         (741 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   301   1e-79
ref|XP_002514778.1| pentatricopeptide repeat-containing protein,...   281   1e-73
ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|2...   274   2e-71
ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containi...   264   2e-68
emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]   257   2e-66

>ref|XP_002270546.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g02650, mitochondrial-like [Vitis vinifera]
          Length = 509

 Score =  301 bits (770), Expect = 1e-79
 Identities = 148/244 (60%), Positives = 191/244 (78%), Gaps = 1/244 (0%)
 Frame = +2

Query: 11  STRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGEAA 190
           +TR V +LVRA    +R+KD Y+LWDLV EIGE + GVL+  ILNE+++ F KLG+G+A 
Sbjct: 183 TTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKAG 242

Query: 191 LEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTISS 367
           LEV N F ++ CEPN DSYY TIEALCRRSI+D AL  CE+MLNA  LPDS K+ + IS 
Sbjct: 243 LEVFNAFGEYGCEPNADSYYFTIEALCRRSIFDWALSVCEKMLNASSLPDSEKVWNIISW 302

Query: 368 FCIGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGNVRKY 547
           FC G K KDA+LVYL+AKEKNK PP+T VNFLI SLC+E  T+ +A+E+L+DFSG  RKY
Sbjct: 303 FCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEMLDDFSGEERKY 362

Query: 548 AMKPFSCVIGGLCRIKDIEEAKKVLSKMIDEGPSPGSAVFNSIINGLLKAGDLDEAMGLL 727
           A+KP++ VI GLCR KD++ AK++L KMI+ GP PG+AVFN +INGL KAG+++EAM ++
Sbjct: 363 AIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAMKMM 422

Query: 728 KVIE 739
             +E
Sbjct: 423 XKLE 426


>ref|XP_002514778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545829|gb|EEF47332.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 584

 Score =  281 bits (718), Expect = 1e-73
 Identities = 146/246 (59%), Positives = 188/246 (76%), Gaps = 1/246 (0%)
 Frame = +2

Query: 2   LKTSTRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQG 181
           +  +TR+V  LVRA  + +RKKD YALWDLV +IGE +  VL+  +LN++++LF KLG+G
Sbjct: 199 INVTTRLVHPLVRAICSELRKKDAYALWDLVKDIGEEENTVLNVDLLNQLIALFSKLGKG 258

Query: 182 EAALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGST 358
           +AA EV NKF DF C P+ ++Y+ TIEALCRRSI+D A    E+ML A  LPD+ KIG  
Sbjct: 259 KAAFEVFNKFGDFGCVPDSETYHYTIEALCRRSIFDWASSVREKMLRAEALPDTEKIGKI 318

Query: 359 ISSFCIGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGNV 538
           I  FC G+KA DA+LVYL+AKEKNK PPQ  VNFLI  LC++ +TVKLALE+L+ FSG  
Sbjct: 319 ICWFCKGDKANDAYLVYLLAKEKNKYPPQPSVNFLIGLLCQKNETVKLALEMLDAFSGPK 378

Query: 539 RKYAMKPFSCVIGGLCRIKDIEEAKKVLSKMIDEGPSPGSAVFNSIINGLLKAGDLDEAM 718
           RKYA+KPFS VI  LCRIKD++ AK +LSKM+DEGP PG+AVFNSIING  K GD+ EA+
Sbjct: 379 RKYAIKPFSSVIRALCRIKDLDGAKMLLSKMVDEGPPPGNAVFNSIINGYSKCGDMKEAI 438

Query: 719 GLLKVI 736
            + +++
Sbjct: 439 KMKQLM 444


>ref|XP_002300357.1| predicted protein [Populus trichocarpa] gi|222847615|gb|EEE85162.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  274 bits (700), Expect = 2e-71
 Identities = 140/248 (56%), Positives = 187/248 (75%), Gaps = 2/248 (0%)
 Frame = +2

Query: 2   LKTSTRVVGSLVRAFRTC-IRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQ 178
           L  +TR +  LV +  +  +R+K+ YALWDLV EIGE + G++S   LN++++L  KLG+
Sbjct: 90  LSVTTRAIDVLVSSICSSELRRKNAYALWDLVREIGEKNEGLVSVGSLNQLIALLSKLGK 149

Query: 179 GEAALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGS 355
           G+AALEV +K +DF C P+ ++YY TIEALCRRS YD A   CE+ML+   LPDS KIG 
Sbjct: 150 GKAALEVFDKSKDFGCVPDSETYYYTIEALCRRSFYDWAWIVCEKMLDQGPLPDSEKIGK 209

Query: 356 TISSFCIGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGN 535
            I  FC G+KAKDAH VYL+AKEK+K PP+  + FLI SLC++  TV LALE+LNDF G 
Sbjct: 210 IICWFCKGSKAKDAHKVYLLAKEKSKCPPKPALYFLIGSLCRDDGTVNLALEMLNDFEGE 269

Query: 536 VRKYAMKPFSCVIGGLCRIKDIEEAKKVLSKMIDEGPSPGSAVFNSIINGLLKAGDLDEA 715
            +KYA+KPFS VI GLCRIKD++ AK++LSKMI EGP PG+AVFN++I+G  K GD+ EA
Sbjct: 270 AKKYAIKPFSSVIRGLCRIKDLDGAKQLLSKMIVEGPPPGNAVFNTVISGYCKGGDMKEA 329

Query: 716 MGLLKVIE 739
           + ++K++E
Sbjct: 330 IEIMKLME 337


>ref|XP_004138984.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
           gi|449477884|ref|XP_004155152.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g02650,
           mitochondrial-like [Cucumis sativus]
          Length = 479

 Score =  264 bits (674), Expect = 2e-68
 Identities = 134/246 (54%), Positives = 180/246 (73%), Gaps = 1/246 (0%)
 Frame = +2

Query: 5   KTSTRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGE 184
           + ST VV  LVR     +R++  Y+LW+L+ EIG     +L+  ILN++++ F KLG+G+
Sbjct: 94  EVSTPVVDVLVRVVCANLRQRVAYSLWELIKEIGGKQTSLLNAEILNQLIAFFSKLGKGK 153

Query: 185 AALEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTI 361
           AALEVLN +E   C PN +SYY T+EALCRRS YD A P CE+ML++  +P+S ++G  I
Sbjct: 154 AALEVLNSYEVLGCVPNAESYYFTVEALCRRSSYDLAWPVCEKMLDSGSMPESNRVGKII 213

Query: 362 SSFCIGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGNVR 541
           S FC GNKAK+AH VYL+AKEK+ + PQ  +N LI SLC++ +TVKLALE+LNDFS   R
Sbjct: 214 SLFCKGNKAKNAHSVYLLAKEKHVNLPQCYMNILIHSLCRDDETVKLALEMLNDFSTGER 273

Query: 542 KYAMKPFSCVIGGLCRIKDIEEAKKVLSKMIDEGPSPGSAVFNSIINGLLKAGDLDEAMG 721
           + A+KP+  VI  LCRIKD  +AK +L KMI EGP PG+A FN++I G  KAGDL+EAM 
Sbjct: 274 RRAIKPYMEVIRSLCRIKDTSKAKTLLQKMIAEGPPPGNAAFNAVICGYSKAGDLEEAME 333

Query: 722 LLKVIE 739
           L+K++E
Sbjct: 334 LIKLME 339


>emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
          Length = 549

 Score =  257 bits (657), Expect = 2e-66
 Identities = 133/244 (54%), Positives = 177/244 (72%), Gaps = 1/244 (0%)
 Frame = +2

Query: 11  STRVVGSLVRAFRTCIRKKDVYALWDLVNEIGENDVGVLSTRILNEVMSLFWKLGQGEAA 190
           +TR V +LVRA    +R+KD Y+LWDLV EIGE + GVL+  ILNE+++ F KLG+G+A 
Sbjct: 183 TTRAVDALVRAVCQSVRRKDTYSLWDLVKEIGEKENGVLNVGILNELIAQFAKLGKGKAG 242

Query: 191 LEVLNKFEDFICEPNVDSYYLTIEALCRRSIYDRALPFCERMLNARDLPDS-KIGSTISS 367
           LEV N F ++                  RSI+D AL  CE+MLNA  LPDS K+ + IS 
Sbjct: 243 LEVFNAFGEY-----------------GRSIFDWALSVCEKMLNASSLPDSEKVWNIISW 285

Query: 368 FCIGNKAKDAHLVYLMAKEKNKSPPQTVVNFLICSLCKEVDTVKLALELLNDFSGNVRKY 547
           FC G K KDA+LVYL+AKEKNK PP+T VNFLI SLC+E  T+ +A+E+L+DFSG   KY
Sbjct: 286 FCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEMLDDFSGEECKY 345

Query: 548 AMKPFSCVIGGLCRIKDIEEAKKVLSKMIDEGPSPGSAVFNSIINGLLKAGDLDEAMGLL 727
           A+KP++ VI GLCR KD++ AK++L KMI+ GP PG+AVFN +INGL KAG+++EAM ++
Sbjct: 346 AIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAMKMM 405

Query: 728 KVIE 739
           K++E
Sbjct: 406 KLME 409