BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021263
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat...   338   3e-91
ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat...   308   4e-82
ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat...   307   8e-82
ref|NP_001031987.1| pentatricopeptide repeat-containing protein ...   288   4e-76
ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab...   287   1e-75

>ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  338 bits (868), Expect = 3e-91
 Identities = 160/200 (80%), Positives = 180/200 (90%)
 Frame = +1

Query: 1   LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
           LRGCSVVGLVEEGRKHF+S+ +VYG+EP+LEHYGCMVDLYGRAG LD+A  FI +MP++P
Sbjct: 351 LRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRP 410

Query: 181 HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
           H GAWGALL+ACKIY NM++GELASR +VELEAKN GAYVLLSNIYADS+DWDRV+NVR+
Sbjct: 411 HVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQ 470

Query: 361 LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLSGYVANTNP 540
            M  KGV K P CSV+EVGGEVHEFFVGDKSHPRY EI+VML EI+RRLKLSGYVANTNP
Sbjct: 471 TMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNP 530

Query: 541 VLFDIDEEEKEDALVRHSEK 600
           V FDI+EEEKEDAL  HSEK
Sbjct: 531 VFFDIEEEEKEDALCMHSEK 550


>ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  308 bits (790), Expect = 4e-82
 Identities = 143/200 (71%), Positives = 172/200 (86%)
 Frame = +1

Query: 1   LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
           L+GCSVVG V+EGR HFDS+K+ +G+EP+LEHYGCMVDLYGRAGRL++A  FI  MP+KP
Sbjct: 350 LKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKP 409

Query: 181 HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
           HAGAWGALL+AC++Y NM+LGE ASR L+E+E KN GAYV LSNIYAD+ +WDRV+NVR+
Sbjct: 410 HAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQ 469

Query: 361 LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLSGYVANTNP 540
            MK +G+ K+P CSVMEV GEVHEFF GDKSHP Y  IE M  EI++RLKL+GYVA+TN 
Sbjct: 470 SMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNS 529

Query: 541 VLFDIDEEEKEDALVRHSEK 600
           VLFDI+EEEKEDAL +HSEK
Sbjct: 530 VLFDIEEEEKEDALCKHSEK 549


>ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  307 bits (787), Expect = 8e-82
 Identities = 143/200 (71%), Positives = 174/200 (87%)
 Frame = +1

Query: 1   LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
           L+GCSVVGLVEEGRKHFDS++ VYG+ P+LEHYG MVD+YGRAGRL +A  FI +MPM+P
Sbjct: 352 LKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRP 411

Query: 181 HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
           H GAW ALL AC++Y N +LGE+A R +VELE KNDGAYVLLSNIYAD ++W+ V+++R+
Sbjct: 412 HVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQ 471

Query: 361 LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLSGYVANTNP 540
            MK KGV+K+P CSV+EV GEVHEF VGDKSHPRY EIE+ L+EI++ L+LSGYVANTNP
Sbjct: 472 TMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNP 531

Query: 541 VLFDIDEEEKEDALVRHSEK 600
           VLFDI+EEEKEDAL +HSEK
Sbjct: 532 VLFDIEEEEKEDALSKHSEK 551


>ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g40405 gi|10178152|dbj|BAB11597.1|
           selenium-binding protein-like [Arabidopsis thaliana]
           gi|332007161|gb|AED94544.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  288 bits (738), Expect = 4e-76
 Identities = 133/200 (66%), Positives = 166/200 (83%)
 Frame = +1

Query: 1   LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
           LRGCSVVG V+EG++HFDS++  +G+EP+LEHYGC+VDLY RAGRL+DA   I+ MPMKP
Sbjct: 348 LRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKP 407

Query: 181 HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
           HA  W +LL A ++Y N++LG LAS+ ++ELE  N GAYVLLSNIYADS DWD V++VR+
Sbjct: 408 HAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQ 467

Query: 361 LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLSGYVANTNP 540
            MK+KGV K P CSVMEV GEVHEFFVGDKSHP+Y +I+ +  +I+RRL+L+GY A+T P
Sbjct: 468 SMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTP 527

Query: 541 VLFDIDEEEKEDALVRHSEK 600
           V+FDIDEEEKEDAL  HSEK
Sbjct: 528 VMFDIDEEEKEDALCLHSEK 547


>ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein
           ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata]
          Length = 1111

 Score =  287 bits (734), Expect = 1e-75
 Identities = 133/200 (66%), Positives = 165/200 (82%)
 Frame = +1

Query: 1   LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
           LRGCSVVG V+EG+KHFDS++  +G+EP+L+HYGC+VDLY RAGRL+DA   I+ MPMK 
Sbjct: 356 LRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKA 415

Query: 181 HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
           HA  W +LL A ++Y N++LG LAS+ ++ELE  N GAYVLLSNIYADS DWD V++VR+
Sbjct: 416 HAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNIYADSDDWDNVSHVRQ 475

Query: 361 LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLSGYVANTNP 540
            MK+KGV K P CSVMEV GEVHEFFVGDKSHP+Y EI+ +  +I+RRL+L+GY A+T P
Sbjct: 476 SMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVWKDISRRLRLAGYKADTTP 535

Query: 541 VLFDIDEEEKEDALVRHSEK 600
           V+FDIDEEEKEDAL  HSEK
Sbjct: 536 VMFDIDEEEKEDALCLHSEK 555



 Score =  192 bits (488), Expect = 4e-47
 Identities = 93/201 (46%), Positives = 136/201 (67%), Gaps = 1/201 (0%)
 Frame = +1

Query: 1    LRGCSVVGLVEEGRKHFDSIKQVYGLEPKLEHYGCMVDLYGRAGRLDDAFEFIKNMPMKP 180
            L  CS  GLVEEGR +F+++ + Y +EP+L+HY CMVDL GR+G L DA+  IK MPM+P
Sbjct: 846  LNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEP 905

Query: 181  HAGAWGALLSACKIYGNMKLGELASRNLVELEAKNDGAYVLLSNIYADSRDWDRVTNVRK 360
             +G WGALL AC++Y + +LG  A++ L ELE ++   Y++LSNIY+ S  W   + +R 
Sbjct: 906  SSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRN 965

Query: 361  LMKNKGVEKIPACSVMEVGGEVHEFFVGDKSHPRYGEIEVMLDEIARRLKLS-GYVANTN 537
            LMK KG+ +    S +E G ++H+F VGD SHP   +I+  L EI +++K   G+ + T 
Sbjct: 966  LMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELGFKSRTE 1025

Query: 538  PVLFDIDEEEKEDALVRHSEK 600
             VL D+DE+ KE+ + +HSEK
Sbjct: 1026 FVLHDVDEDVKEEMINQHSEK 1046