BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00021106
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi...    72   4e-11
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ...    66   2e-09
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ...    65   3e-09

>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 313

 Score = 71.6 bits (174), Expect(2) = 4e-11
 Identities = 37/74 (50%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
 Frame = +3

Query: 6   NGFSYGVATCNGLILMYCKCGDFVTVRKVFD-----------GMIAGYGMHGFSSEVFKQ 152
           NG +  +AT N LI MY KCGD    RKVFD            M+AGYG+HG   EVF+ 
Sbjct: 137 NGLASDLATINALISMYSKCGDLAAARKVFDRMTERNLVTWSAMMAGYGVHGVFGEVFEL 196

Query: 153 FEEMLDAGESPGGV 194
           F+ M+DAGE P GV
Sbjct: 197 FDGMVDAGEVPDGV 210



 Score = 20.8 bits (42), Expect(2) = 4e-11
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 196 ILAACSHG 219
           +LAACSHG
Sbjct: 215 VLAACSHG 222


>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 315

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/75 (49%), Positives = 45/75 (60%), Gaps = 11/75 (14%)
 Frame = +3

Query: 3   VNGFSYGVATCNGLILMYCKCGDFVTVRKVFDGM-----------IAGYGMHGFSSEVFK 149
           VNGF   +A  N LI MY KCG  V  RK+FD M           +AGYGMHG   EVF+
Sbjct: 137 VNGFGLDLANSNALINMYSKCGHLVYARKLFDRMWQRNEITFSTMMAGYGMHGKCGEVFE 196

Query: 150 QFEEMLDAGESPGGV 194
            F++M++AGE P GV
Sbjct: 197 LFDKMVEAGERPDGV 211


>ref|XP_004144516.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449515851|ref|XP_004164961.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 308

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
 Frame = +3

Query: 3   VNGFSYGVATCNGLILMYCKCGDFVTVRKVFDGM-----------IAGYGMHGFSSEVFK 149
           +NGFS  + + N LI MY KCGD    RKVFDGM           +AGYG+HG   EVF+
Sbjct: 137 INGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFR 196

Query: 150 QFEEMLDAGESP 185
            FE M++ G+ P
Sbjct: 197 LFERMVEEGQKP 208


>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355520845|gb|AET01299.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 355

 Score = 65.9 bits (159), Expect(2) = 2e-09
 Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
 Frame = +3

Query: 3   VNGFSYGVATCNGLILMYCKCGDFVTVRKVFDG-----------MIAGYGMHGFSSEVFK 149
           VNGF+  +   N LI MY KCG+    RKVFDG           MIAGYGMHG   EVF+
Sbjct: 137 VNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMHGRFEEVFE 196

Query: 150 QFEEMLDAGESPGGVN 197
            F  M++ GE    V+
Sbjct: 197 MFNRMVEVGERMDNVS 212



 Score = 21.2 bits (43), Expect(2) = 2e-09
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 172 LENRLVVLILAACSHG 219
           ++N    ++L ACSHG
Sbjct: 208 MDNVSFTVVLTACSHG 223


>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355485919|gb|AES67122.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 316

 Score = 64.7 bits (156), Expect(2) = 3e-09
 Identities = 34/76 (44%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
 Frame = +3

Query: 3   VNGFSYGVATCNGLILMYCKCGDFVTVRKVFDG-----------MIAGYGMHGFSSEVFK 149
           VNGF+  +   N LI MY KCG+    RKVFDG           M+AGYGMHG   EVF+
Sbjct: 137 VNGFALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMHGRFEEVFE 196

Query: 150 QFEEMLDAGESPGGVN 197
            F  M++ GE    V+
Sbjct: 197 MFNRMVEVGERMDNVS 212



 Score = 21.2 bits (43), Expect(2) = 3e-09
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 172 LENRLVVLILAACSHG 219
           ++N    ++L ACSHG
Sbjct: 208 MDNVSFTVVLTACSHG 223