BLASTX nr result
ID: Coptis24_contig00021088
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00021088
(492 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74283.1| hypothetical protein VITISV_032452 [Vitis vinifera] 82 3e-26
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 74 7e-26
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 74 7e-26
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 74 2e-25
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 74 2e-25
>emb|CAN74283.1| hypothetical protein VITISV_032452 [Vitis vinifera]
Length = 1338
Score = 81.6 bits (200), Expect(2) = 3e-26
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Frame = -2
Query: 488 ILQYVKGPLSVGIFYASGGHCDLVGYTDSDWAGDVAEKKEHLWF-------CVSYSSKKQ 330
IL+Y+KG + G+FY GG+ +L+ YTDSD+AGD+ ++K + VS+SSKKQ
Sbjct: 1158 ILRYLKGTIDFGVFYKKGGNEELIAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQ 1217
Query: 329 -VVALSTXXXXXXXXXXXXXXAV*LWRLCEELHHKQALPTKIYCDNKSAITLTKTQCFMG 153
VV+LST A+ L R+ E L+H Q T +YCDN S I L+K G
Sbjct: 1218 PVVSLSTTEAEFIAATSCVCQAIWLRRILEGLNHAQHDSTTVYCDNSSTIKLSKNLVMHG 1277
Score = 62.0 bits (149), Expect(2) = 3e-26
Identities = 27/55 (49%), Positives = 39/55 (70%)
Frame = -1
Query: 174 QNPVFYGRSKHIKINFHYIHELVQEREVAMEFCKSDDQVADILTKPLKVKAFYKL 10
+N V +GR KHI ++FH++ EL ++ V M C + +QVADI+TKPLK+ F KL
Sbjct: 1271 KNLVMHGRCKHIDVHFHFLRELTKDGTVEMVHCHTQEQVADIMTKPLKLDTFLKL 1325
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 74.3 bits (181), Expect(2) = 7e-26
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = -2
Query: 488 ILQYVKGPLSVGIFYASGGHCDLVGYTDSDWAGDVAEKKEHLWF-------CVSYSSKKQ 330
IL+Y+KG ++ G+ Y++ LVGY+DSDW GDV ++K F ++ SKKQ
Sbjct: 1168 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1227
Query: 329 -VVALSTXXXXXXXXXXXXXXAV*LWRLCEELHHKQALPTKIYCDNKSAITLTKTQCF 159
+V LST A+ L L +EL Q PTKI+ DNKSAI L K F
Sbjct: 1228 PIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVF 1285
Score = 67.8 bits (164), Expect(2) = 7e-26
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = -1
Query: 174 QNPVFYGRSKHIKINFHYIHELVQEREVAMEFCKSDDQVADILTKPLKVKAFYKL 10
+NPVF+ RSKHI +HYI E V +++V +E+ K+ DQVADI TKPLK + F K+
Sbjct: 1281 KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKM 1335
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 74.3 bits (181), Expect(2) = 7e-26
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = -2
Query: 488 ILQYVKGPLSVGIFYASGGHCDLVGYTDSDWAGDVAEKKEHLWF-------CVSYSSKKQ 330
IL+Y+KG ++ G+ Y++ LVGY+DSDW GDV ++K F ++ SKKQ
Sbjct: 1136 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1195
Query: 329 -VVALSTXXXXXXXXXXXXXXAV*LWRLCEELHHKQALPTKIYCDNKSAITLTKTQCF 159
+V LST A+ L L +EL Q PTKI+ DNKSAI L K F
Sbjct: 1196 PIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVF 1253
Score = 67.8 bits (164), Expect(2) = 7e-26
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = -1
Query: 174 QNPVFYGRSKHIKINFHYIHELVQEREVAMEFCKSDDQVADILTKPLKVKAFYKL 10
+NPVF+ RSKHI +HYI E V +++V +E+ K+ DQVADI TKPLK + F K+
Sbjct: 1249 KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKM 1303
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 74.3 bits (181), Expect(2) = 2e-25
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = -2
Query: 488 ILQYVKGPLSVGIFYASGGHCDLVGYTDSDWAGDVAEKKEHLWF-------CVSYSSKKQ 330
IL+Y+KG ++ G+ Y++ LVGY+DSDW GDV ++K F ++ SKKQ
Sbjct: 1168 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1227
Query: 329 -VVALSTXXXXXXXXXXXXXXAV*LWRLCEELHHKQALPTKIYCDNKSAITLTKTQCF 159
+V LST A+ L L +EL Q PTKI+ DNKSAI L K F
Sbjct: 1228 PIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVF 1285
Score = 66.2 bits (160), Expect(2) = 2e-25
Identities = 29/55 (52%), Positives = 40/55 (72%)
Frame = -1
Query: 174 QNPVFYGRSKHIKINFHYIHELVQEREVAMEFCKSDDQVADILTKPLKVKAFYKL 10
+NPVF+ RSKHI +HYI E V +++V +E+ K+ DQVAD TKPLK + F K+
Sbjct: 1281 KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKM 1335
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 74.3 bits (181), Expect(2) = 2e-25
Identities = 47/118 (39%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = -2
Query: 488 ILQYVKGPLSVGIFYASGGHCDLVGYTDSDWAGDVAEKKEHLWF-------CVSYSSKKQ 330
IL+Y+KG ++ G+ Y++ LVGY+DSDW GDV ++K F ++ SKKQ
Sbjct: 1168 ILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQ 1227
Query: 329 -VVALSTXXXXXXXXXXXXXXAV*LWRLCEELHHKQALPTKIYCDNKSAITLTKTQCF 159
+V LST A+ L L +EL Q PTKI+ DNKSAI L K F
Sbjct: 1228 PIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVF 1285
Score = 66.2 bits (160), Expect(2) = 2e-25
Identities = 29/55 (52%), Positives = 40/55 (72%)
Frame = -1
Query: 174 QNPVFYGRSKHIKINFHYIHELVQEREVAMEFCKSDDQVADILTKPLKVKAFYKL 10
+NPVF+ RSKHI +HYI E V +++V +E+ K+ DQVAD TKPLK + F K+
Sbjct: 1281 KNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKM 1335