BLASTX nr result

ID: Coptis24_contig00020653 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020653
         (201 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329692.1| argonaute protein group [Populus trichocarpa...    62   5e-08
dbj|BAG12806.1| argonaute1 [Daucus carota]                             62   6e-08
ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumi...    61   1e-07
gb|ABC61503.1| AGO1-2, partial [Nicotiana benthamiana]                 61   1e-07
gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV4...    61   1e-07

>ref|XP_002329692.1| argonaute protein group [Populus trichocarpa]
           gi|222870600|gb|EEF07731.1| argonaute protein group
           [Populus trichocarpa]
          Length = 682

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/31 (96%), Positives = 30/31 (96%)
 Frame = -2

Query: 200 RGVRVEVTHRGNMRRKYRIFGLTSQATRELT 108
           RGVRVEVTHRGNMRRKYRI GLTSQATRELT
Sbjct: 50  RGVRVEVTHRGNMRRKYRISGLTSQATRELT 80


>dbj|BAG12806.1| argonaute1 [Daucus carota]
          Length = 1107

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -2

Query: 200 RGVRVEVTHRGNMRRKYRIFGLTSQATRELT 108
           RGV+VEVTHRGNMRRKYRI GLTSQATRELT
Sbjct: 481 RGVKVEVTHRGNMRRKYRIIGLTSQATRELT 511


>ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus]
           gi|449523970|ref|XP_004168996.1| PREDICTED: protein
           argonaute 1A-like [Cucumis sativus]
          Length = 1064

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -2

Query: 200 RGVRVEVTHRGNMRRKYRIFGLTSQATRELT 108
           RGV+VEVTHRGNMRRKYRI GLTSQATRELT
Sbjct: 434 RGVKVEVTHRGNMRRKYRISGLTSQATRELT 464


>gb|ABC61503.1| AGO1-2, partial [Nicotiana benthamiana]
          Length = 979

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -2

Query: 200 RGVRVEVTHRGNMRRKYRIFGLTSQATRELT 108
           RGV+VEVTHRGNMRRKYRI GLTSQATRELT
Sbjct: 346 RGVKVEVTHRGNMRRKYRISGLTSQATRELT 376


>gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1|
           argonaute1-1, partial [Solanum lycopersicum]
          Length = 1054

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 29/31 (93%), Positives = 30/31 (96%)
 Frame = -2

Query: 200 RGVRVEVTHRGNMRRKYRIFGLTSQATRELT 108
           RGV+VEVTHRGNMRRKYRI GLTSQATRELT
Sbjct: 422 RGVKVEVTHRGNMRRKYRISGLTSQATRELT 452


Top