BLASTX nr result
ID: Coptis24_contig00020192
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00020192
(692 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002328268.1| predicted protein [Populus trichocarpa] gi|2... 287 1e-75
gb|ABK95971.1| unknown [Populus trichocarpa] 287 1e-75
emb|CBI37746.3| unnamed protein product [Vitis vinifera] 286 4e-75
ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containi... 286 4e-75
ref|XP_002520932.1| pentatricopeptide repeat-containing protein,... 270 2e-70
>ref|XP_002328268.1| predicted protein [Populus trichocarpa] gi|222837783|gb|EEE76148.1|
predicted protein [Populus trichocarpa]
Length = 749
Score = 287 bits (735), Expect = 1e-75
Identities = 136/225 (60%), Positives = 178/225 (79%)
Frame = -2
Query: 688 FFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGLI 509
F Q+ +NIV+WSAMIAAYG +G H+AL+L EM+ HGLKPN VT +S+L+AC HGGL+
Sbjct: 510 FDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLV 569
Query: 508 EEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGAL 329
EEG + F+ +V++ GL+P EHYSCMVDML RAG LD+A E+I +MP + GAS+WG+L
Sbjct: 570 EEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSL 629
Query: 328 LSACRNYGSSVLGGGAASHVLELEPSNSAGYLLASSMFAASGLWEDAARMRRMVKDKAVR 149
LSACR+YG + LG A S VLELEPSNSAGYL+ASSM+AA GLW+DAAR+R + K+K V+
Sbjct: 630 LSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVK 689
Query: 148 VVAGYSMVHVGNRAYKFVAEDSSHPHFEEVHAVTDQLHSYIKMDK 14
VVAGYS+VH+ N+A +FVA D SHP +E+ ++ QLH IK+D+
Sbjct: 690 VVAGYSLVHIDNKACRFVAGDGSHPRSDEIFSMAQQLHDCIKIDE 734
Score = 61.6 bits (148), Expect = 1e-07
Identities = 38/145 (26%), Positives = 77/145 (53%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGL 512
VF +M R++VSWS MI+ + G+ +A+++ +EM+ +KPN +T+I++L AC
Sbjct: 408 VFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAE 467
Query: 511 IEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGA 332
++ + +R QG + + +VDM ++ G + ++ + + + I W A
Sbjct: 468 LKRSKWAHGVAIR-QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIV---TWSA 523
Query: 331 LLSACRNYGSSVLGGGAASHVLELE 257
+++A YG + L A + E++
Sbjct: 524 MIAA---YGMNGLAHEALALFAEMK 545
>gb|ABK95971.1| unknown [Populus trichocarpa]
Length = 749
Score = 287 bits (735), Expect = 1e-75
Identities = 136/225 (60%), Positives = 178/225 (79%)
Frame = -2
Query: 688 FFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGLI 509
F Q+ +NIV+WSAMIAAYG +G H+AL+L EM+ HGLKPN VT +S+L+AC HGGL+
Sbjct: 510 FDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLV 569
Query: 508 EEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGAL 329
EEG + F+ +V++ GL+P EHYSCMVDML RAG LD+A E+I +MP + GAS+WG+L
Sbjct: 570 EEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSL 629
Query: 328 LSACRNYGSSVLGGGAASHVLELEPSNSAGYLLASSMFAASGLWEDAARMRRMVKDKAVR 149
LSACR+YG + LG A S VLELEPSNSAGYL+ASSM+AA GLW+DAAR+R + K+K V+
Sbjct: 630 LSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIRVLAKEKGVK 689
Query: 148 VVAGYSMVHVGNRAYKFVAEDSSHPHFEEVHAVTDQLHSYIKMDK 14
VVAGYS+VH+ N+A +FVA D SHP +E+ ++ QLH IK+D+
Sbjct: 690 VVAGYSLVHIDNKACRFVAGDGSHPRSDEIFSMAQQLHDCIKIDE 734
Score = 61.6 bits (148), Expect = 1e-07
Identities = 38/145 (26%), Positives = 77/145 (53%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGL 512
VF +M R++VSWS MI+ + G+ +A+++ +EM+ +KPN +T+I++L AC
Sbjct: 408 VFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAE 467
Query: 511 IEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGA 332
++ + +R QG + + +VDM ++ G + ++ + + + I W A
Sbjct: 468 LKRSKWAHGVAIR-QGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIV---TWSA 523
Query: 331 LLSACRNYGSSVLGGGAASHVLELE 257
+++A YG + L A + E++
Sbjct: 524 MIAA---YGMNGLAHEALALFAEMK 545
>emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 286 bits (731), Expect = 4e-75
Identities = 139/223 (62%), Positives = 174/223 (78%)
Frame = -2
Query: 688 FFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGLI 509
F Q+P++NIVSW AMIAA G +G DAL+LL EM+LHGLKPN VT +S+LSAC HGGL+
Sbjct: 497 FDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLV 556
Query: 508 EEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGAL 329
EEG + F +V+D G++P +EHYSCMVDML+RAG L+SA +I MP + GA +WGAL
Sbjct: 557 EEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGAL 616
Query: 328 LSACRNYGSSVLGGGAASHVLELEPSNSAGYLLASSMFAASGLWEDAARMRRMVKDKAVR 149
LSACR+ G+S LG GAA VLELEP +SAGY LASSM+AASGLW DAARMR +VK + VR
Sbjct: 617 LSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVR 676
Query: 148 VVAGYSMVHVGNRAYKFVAEDSSHPHFEEVHAVTDQLHSYIKM 20
VVAGYS+VHV ++A++FVA D SHP E+ V +QLH +K+
Sbjct: 677 VVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVEQLHDCMKI 719
Score = 63.5 bits (153), Expect = 4e-08
Identities = 36/125 (28%), Positives = 69/125 (55%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGL 512
+F ++ ++ VSWSAMIA + G+ +A++L +EM KPN VT++S+L A
Sbjct: 395 LFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSAD 454
Query: 511 IEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGA 332
++ + +R +GL + + ++DM A+ G + + + + +P + I WGA
Sbjct: 455 LKRSKWAHGIAIR-RGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVS---WGA 510
Query: 331 LLSAC 317
+++AC
Sbjct: 511 MIAAC 515
Score = 60.1 bits (144), Expect = 4e-07
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHG-LKPNAVTMISILSACGHGG 515
+F +M +R+++SWS MI Y G AL L EM + ++ + +TM+S+L AC + G
Sbjct: 192 LFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTG 251
Query: 514 LIEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWG 335
I GR+ +V +GL + + ++DM ++ + +SA + N MP W
Sbjct: 252 DISMGRS-VHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCR---NTVSWN 307
Query: 334 ALLS 323
+++S
Sbjct: 308 SIIS 311
>ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17210-like
[Vitis vinifera]
Length = 742
Score = 286 bits (731), Expect = 4e-75
Identities = 139/223 (62%), Positives = 174/223 (78%)
Frame = -2
Query: 688 FFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGLI 509
F Q+P++NIVSW AMIAA G +G DAL+LL EM+LHGLKPN VT +S+LSAC HGGL+
Sbjct: 511 FDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLV 570
Query: 508 EEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGAL 329
EEG + F +V+D G++P +EHYSCMVDML+RAG L+SA +I MP + GA +WGAL
Sbjct: 571 EEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGAL 630
Query: 328 LSACRNYGSSVLGGGAASHVLELEPSNSAGYLLASSMFAASGLWEDAARMRRMVKDKAVR 149
LSACR+ G+S LG GAA VLELEP +SAGY LASSM+AASGLW DAARMR +VK + VR
Sbjct: 631 LSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVR 690
Query: 148 VVAGYSMVHVGNRAYKFVAEDSSHPHFEEVHAVTDQLHSYIKM 20
VVAGYS+VHV ++A++FVA D SHP E+ V +QLH +K+
Sbjct: 691 VVAGYSLVHVEDKAWRFVAGDESHPRAGEIWGVVEQLHDCMKI 733
Score = 63.5 bits (153), Expect = 4e-08
Identities = 36/125 (28%), Positives = 69/125 (55%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGL 512
+F ++ ++ VSWSAMIA + G+ +A++L +EM KPN VT++S+L A
Sbjct: 409 LFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSAD 468
Query: 511 IEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGA 332
++ + +R +GL + + ++DM A+ G + + + + +P + I WGA
Sbjct: 469 LKRSKWAHGIAIR-RGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVS---WGA 524
Query: 331 LLSAC 317
+++AC
Sbjct: 525 MIAAC 529
Score = 60.1 bits (144), Expect = 4e-07
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHG-LKPNAVTMISILSACGHGG 515
+F +M +R+++SWS MI Y G AL L EM + ++ + +TM+S+L AC + G
Sbjct: 206 LFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTG 265
Query: 514 LIEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWG 335
I GR+ +V +GL + + ++DM ++ + +SA + N MP W
Sbjct: 266 DISMGRS-VHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCR---NTVSWN 321
Query: 334 ALLS 323
+++S
Sbjct: 322 SIIS 325
>ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539898|gb|EEF41477.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 757
Score = 270 bits (691), Expect = 2e-70
Identities = 127/229 (55%), Positives = 172/229 (75%)
Frame = -2
Query: 688 FFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGLI 509
F Q+P +NI++WS MIAAYG +G H+AL+LL +M+ H +KPNA+T +S+L+AC HGGL+
Sbjct: 526 FNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGGLV 585
Query: 508 EEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGAL 329
E G + F+ +++D G+ P EHYSCMVDML+RAG LD A E+I MP AGASVWGAL
Sbjct: 586 EMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFRAGASVWGAL 645
Query: 328 LSACRNYGSSVLGGGAASHVLELEPSNSAGYLLASSMFAASGLWEDAARMRRMVKDKAVR 149
LSACR Y SS LG A VLELEP N AGYLLASSM+A+ GLW++AARM+ + +++ VR
Sbjct: 646 LSACRTYRSSTLGEKAVYQVLELEPLNLAGYLLASSMYASDGLWDNAARMKLLARERGVR 705
Query: 148 VVAGYSMVHVGNRAYKFVAEDSSHPHFEEVHAVTDQLHSYIKMDKVHDV 2
VAGYS+VHV ++A+KFVA D S +H + +QLH +K+D++ ++
Sbjct: 706 AVAGYSIVHVDSKAHKFVAGDKSCSQAGNIHHMLNQLHFCMKIDQIENI 754
Score = 60.5 bits (145), Expect = 3e-07
Identities = 46/185 (24%), Positives = 92/185 (49%), Gaps = 5/185 (2%)
Frame = -2
Query: 691 VFFQMPDRNIVSWSAMIAAYGTHGRGHDALSLLKEMELHGLKPNAVTMISILSACGHGGL 512
VF + R++V WS MIA + G+ +A+++ ++M PNAVT+I++L AC
Sbjct: 424 VFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACSVSAE 483
Query: 511 IEEGRACFRKIVRDQGLQPSMEHYSCMVDMLARAGNLDSAAEMINSMPAEVIAGASVWGA 332
++ +R +GL + + +VDM ++ G ++++ + N +P + I W
Sbjct: 484 LKRSMWAHGAAIR-RGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNII---TWST 539
Query: 331 LLSACRNYGSSVLGGGAASHVLELE----PSNSAGYLLASSMFAASGLWE-DAARMRRMV 167
+++A YG + L A + + +++ N+ YL + + GL E + + M+
Sbjct: 540 MIAA---YGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMI 596
Query: 166 KDKAV 152
+D V
Sbjct: 597 QDHGV 601