BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00020025
         (212 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003581576.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-...    76   2e-12
ref|XP_002968883.1| ubiquitin-protein ligase, UPL3 [Selaginella ...    57   2e-06
ref|XP_002974090.1| ubiquitin-protein ligase, UPL3 [Selaginella ...    57   2e-06

>ref|XP_003581576.1| PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Brachypodium
           distachyon]
          Length = 1860

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 48/103 (46%), Positives = 53/103 (51%), Gaps = 39/103 (37%)
 Frame = -2

Query: 193 LNCLEKTSEEYSTTCLRAVALMAVLSYLDFFSI--------------------------- 95
           L  L+K S+E+ T CLRA ALMAVLSYLDFFS                            
Sbjct: 287 LQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANICRKLPSDASDFVME 346

Query: 94  ------------DV*VLEHASVCLAQITEALASSPEKLDELCN 2
                       D  VLEHASVCL +I+EA ASSPEKLDELCN
Sbjct: 347 AVPLLTNLLNYHDTKVLEHASVCLTRISEAFASSPEKLDELCN 389


>ref|XP_002968883.1| ubiquitin-protein ligase, UPL3 [Selaginella moellendorffii]
           gi|300163388|gb|EFJ29999.1| ubiquitin-protein ligase,
           UPL3 [Selaginella moellendorffii]
          Length = 1827

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 39/103 (37%)
 Frame = -2

Query: 193 LNCLEKTSEEYSTTCLRAVALMAVLSYLDFFSI--------------------------- 95
           L  LEK S E+   CLRA AL+AVLSYLDFFS                            
Sbjct: 272 LQALEKISHEHPAACLRAGALVAVLSYLDFFSTGVQRVAVSTAANICRQLPSDGVNFVME 331

Query: 94  ------------DV*VLEHASVCLAQITEALASSPEKLDELCN 2
                       D  V++HAS+CL +I ++ A+S EK+D LC+
Sbjct: 332 SVPILTNLLQYQDPKVVDHASLCLTRIADSFANSSEKIDVLCS 374


>ref|XP_002974090.1| ubiquitin-protein ligase, UPL3 [Selaginella moellendorffii]
           gi|300158422|gb|EFJ25045.1| ubiquitin-protein ligase,
           UPL3 [Selaginella moellendorffii]
          Length = 1827

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 39/103 (37%)
 Frame = -2

Query: 193 LNCLEKTSEEYSTTCLRAVALMAVLSYLDFFSI--------------------------- 95
           L  LEK S E+   CLRA AL+AVLSYLDFFS                            
Sbjct: 272 LQALEKISHEHPAACLRAGALVAVLSYLDFFSTGVQRVAVSTAANICRQLPSDGVNFVME 331

Query: 94  ------------DV*VLEHASVCLAQITEALASSPEKLDELCN 2
                       D  V++HAS+CL +I ++ A+S EK+D LC+
Sbjct: 332 SVPILTNLLQYQDPKVVDHASLCLTRIADSFANSSEKIDVLCS 374