BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019300
         (501 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_195043.1| pentatricopeptide repeat-containing protein [Ar...   114   1e-23
ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
emb|CBI20738.3| unnamed protein product [Vitis vinifera]              107   1e-21
emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]   105   4e-21
ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   102   3e-20

>ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g33170 gi|4455331|emb|CAB36791.1| putative protein
           [Arabidopsis thaliana] gi|7270265|emb|CAB80034.1|
           putative protein [Arabidopsis thaliana]
           gi|332660786|gb|AEE86186.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/84 (64%), Positives = 66/84 (78%)
 Frame = +1

Query: 229 SSFSPWFPILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKL 408
           SS S WF  L+N+IT  +L LGKCTHARI+ F +   RFL NNLI+MYSKCG L YAR++
Sbjct: 37  SSSSQWFGFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRV 96

Query: 409 FDQSPNRDLVTWNSILAGYAVSAE 480
           FD+ P+RDLV+WNSILA YA S+E
Sbjct: 97  FDKMPDRDLVSWNSILAAYAQSSE 120



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 42/72 (58%)
 Frame = +1

Query: 253 ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 432
           +L  ++   +L LG+  H   ++ G      ++N+LINMY K     +AR +FD    RD
Sbjct: 321 MLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERD 380

Query: 433 LVTWNSILAGYA 468
           L++WNS++AG A
Sbjct: 381 LISWNSVIAGIA 392


>ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 1580

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = +1

Query: 229 SSFSPWFPILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKL 408
           SS S WF +L+ +I+  NL LGKCTHARI+  G   + FL+NNL+ MYSKCG L  AR++
Sbjct: 619 SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQV 678

Query: 409 FDQSPNRDLVTWNSILAGYAVSAETDD 489
           FD +P RDLVTWN+IL  YA S +++D
Sbjct: 679 FDTTPERDLVTWNAILGAYAASVDSND 705



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = +1

Query: 280  NLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDLVTWNSILA 459
            +L LGK  H   ++ G  S+  + N+L+NMYSK G   +AR++F+   + DL++WNS+++
Sbjct: 919  DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 460  GYAVSAETDDS 492
              A S+  ++S
Sbjct: 979  SCAQSSLEEES 989


>emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  107 bits (267), Expect = 1e-21
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = +1

Query: 229 SSFSPWFPILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKL 408
           SS S WF +L+ +I+  NL LGKCTHARI+  G   + FL+NNL+ MYSKCG L  AR++
Sbjct: 75  SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQV 134

Query: 409 FDQSPNRDLVTWNSILAGYAVSAETDD 489
           FD +P RDLVTWN+IL  YA S +++D
Sbjct: 135 FDTTPERDLVTWNAILGAYAASVDSND 161



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/71 (36%), Positives = 46/71 (64%)
 Frame = +1

Query: 280 NLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRDLVTWNSILA 459
           +L LGK  H   ++ G  S+  + N+L+NMYSK G   +AR++F+   + DL++WNS+++
Sbjct: 301 DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 360

Query: 460 GYAVSAETDDS 492
             A S+  ++S
Sbjct: 361 SCAQSSLEEES 371


>emb|CAN66439.1| hypothetical protein VITISV_035236 [Vitis vinifera]
          Length = 2076

 Score =  105 bits (262), Expect = 4e-21
 Identities = 48/87 (55%), Positives = 64/87 (73%)
 Frame = +1

Query: 229 SSFSPWFPILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKL 408
           SS S WF +L+ +I+  NL LGKCTHARI+  G   + FLTNNL+ +YSKCG L +A ++
Sbjct: 82  SSSSQWFSLLRTAISTHNLLLGKCTHARIVVSGTAGDHFLTNNLLTLYSKCGSLSFACQV 141

Query: 409 FDQSPNRDLVTWNSILAGYAVSAETDD 489
           FD +P RDLVTWN+IL  YA S +++D
Sbjct: 142 FDTTPERDLVTWNAILGAYASSVDSND 168


>ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  102 bits (254), Expect = 3e-20
 Identities = 50/85 (58%), Positives = 64/85 (75%)
 Frame = +1

Query: 229 SSFSPWFPILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKL 408
           SS S WF +L+++I   +L LGK  HARI+  GD  +R+LTNNLI MYSKCG L  AR++
Sbjct: 609 SSSSQWFSLLRSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQV 668

Query: 409 FDQSPNRDLVTWNSILAGYAVSAET 483
           FD+S +RDLVTWNSILA YA  A++
Sbjct: 669 FDKSSDRDLVTWNSILAAYAQFADS 693



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/72 (38%), Positives = 45/72 (62%)
 Frame = +1

Query: 253  ILQNSITQRNLPLGKCTHARIIRFGDYSNRFLTNNLINMYSKCGVLDYARKLFDQSPNRD 432
            IL  ++   +L LG+  HA +I+        ++N+L+NMYSK GV+  A K F  SP  D
Sbjct: 900  ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959

Query: 433  LVTWNSILAGYA 468
            L++WN++++ YA
Sbjct: 960  LISWNTMISSYA 971