BLASTX nr result

ID: Coptis24_contig00019216 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019216
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309893.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07
ref|XP_002517229.1| hypothetical protein RCOM_1460060 [Ricinus c...    57   2e-06
ref|XP_002891270.1| predicted protein [Arabidopsis lyrata subsp....    56   3e-06
ref|XP_002306612.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06

>ref|XP_002309893.1| predicted protein [Populus trichocarpa] gi|222852796|gb|EEE90343.1|
           predicted protein [Populus trichocarpa]
          Length = 388

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +3

Query: 66  IKSKASVCQTCGNKGYEELLLCCSKCQISMKHKYCLMEIPEKVGKDFIYTCQQC 227
           +  K +VCQ CG++G  + L+ C+KC +S +H YCL  +P K  K+ ++ C++C
Sbjct: 8   VVDKMNVCQKCGDRGDVKRLIYCNKCHVSAEHSYCLDTLPRKGEKEVLWACEEC 61


>ref|XP_002517229.1| hypothetical protein RCOM_1460060 [Ricinus communis]
           gi|223543600|gb|EEF45129.1| hypothetical protein
           RCOM_1460060 [Ricinus communis]
          Length = 250

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 33/54 (61%)
 Frame = +3

Query: 84  VCQTCGNKGYEELLLCCSKCQISMKHKYCLMEIPEKVGKDFIYTCQQCQPSSAK 245
           VCQ CG+KG  + L+ C KCQ+S +H YCL  +P +  K   +TC +C    AK
Sbjct: 3   VCQKCGDKGDMKCLVYCVKCQVSSEHSYCLETLPGEGDKMMTWTCAECSLRDAK 56


>ref|XP_002891270.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297337112|gb|EFH67529.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 110

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +3

Query: 60  VQIKSKASVCQTCGNKGYEELLLCCSKCQISMKHKYCLMEIPEKVGKDFIYTCQQCQPSS 239
           + +  KA VCQTCG+ G+EE L+ C  C+I   H+YC+   P    +   + C+ C  S 
Sbjct: 1   MSVNIKAPVCQTCGDIGFEEALVFCDSCKIESIHRYCIGITPTPFTEYITWICEDCDASD 60

Query: 240 AKQNSPE 260
           +  +  E
Sbjct: 61  SDSDCNE 67


>ref|XP_002306612.1| predicted protein [Populus trichocarpa] gi|222856061|gb|EEE93608.1|
           predicted protein [Populus trichocarpa]
          Length = 474

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +3

Query: 81  SVCQTCGNKGYEELLLCCSKCQISMKHKYCLMEIPEKVGKDFIYTCQQC 227
           +VCQ CG++GY E L  C KC++  +H YCL  +P+   +D ++TC  C
Sbjct: 57  TVCQKCGDRGYPEALNYCVKCKVVAEHTYCLDVVPKDFDEDVVWTCWFC 105