BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00019007
         (1312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    74   8e-11
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    72   2e-10
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    64   1e-07
ref|XP_003590217.1| hypothetical protein MTR_1g050070 [Medicago ...    62   3e-07
ref|XP_002516681.1| conserved hypothetical protein [Ricinus comm...    62   4e-07

>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 73.9 bits (180), Expect = 8e-11
 Identities = 43/126 (34%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +1

Query: 454 GGAGVISRNSTNEIVGVLAQGLGVVTNFEAESMAIVLAVEIATRHGWMKIWIEADSSAAI 633
           G  G + RN     +G  AQ +G  T F+AE  A + A+E +  +    IW+E DS   +
Sbjct: 26  GATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSIEYNLRDIWLETDSKLVV 85

Query: 634 CSF-KEDKVPWQLRQRWVRATNKLQEVR--ITHVFREXXXXXXXXXKEGSHLPKYVSLWS 804
            +F   + VPWQLR RW       Q+++   TH+ RE         K G  L    S W 
Sbjct: 86  KAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAGADSLAKNGKSLALLTSQWW 145

Query: 805 SSRPEF 822
           SS P F
Sbjct: 146 SSSPLF 151


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 72.4 bits (176), Expect = 2e-10
 Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
 Frame = +1

Query: 349  PRKRLPKQIC----PNPSLCPSNQ*IHKDFSVLLGNLGYGGAGVISRNSTNEIVGVLAQG 516
            PR R  K I      NPS  P    ++ D SV+ G    GG   + R+S+   +G  +  
Sbjct: 1002 PRHRKYKDIILVLWKNPS--PPLLKVNTDGSVVGGLAACGG---LFRDSSGSFLGAFSCN 1056

Query: 517  LGVVTNFEAESMAIVLAVEIATRHGWMKIWIEADSSAAICSFKEDK-VPWQLRQRWVRAT 693
            +G+ + F AE++A +LA+E A  HGW  +W+E+DS++A+  F     V W LR RW  A 
Sbjct: 1057 IGLASVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQ 1116

Query: 694  NKLQEVRITHVFRE 735
                +V  +H+  E
Sbjct: 1117 RLGIQVISSHILHE 1130


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
 Frame = +1

Query: 463 GVISRNSTNEIVGVLAQGLGVVTNFEAESMAIVLAVEIATRHGWMKIWIEADSSAAICSF 642
           G + R+     +   A+ LG  + ++ E  AI+  VEIA +  W  IWIE+DS+  + +F
Sbjct: 249 GGVFRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVVMAF 308

Query: 643 KE-DKVPWQLRQRWVRATNKLQEVR--ITHVFREXXXXXXXXXKEGSHLPKYVSLWSSSR 813
           K+   +P +LR RW+     L  +   ITH++RE          +G  + + V++W  + 
Sbjct: 309 KKMSMIPCRLRNRWINCRKLLCRMNFVITHIYREDNRCADKLASKGLDI-EGVTIW-LNM 366

Query: 814 PEFV 825
           P+F+
Sbjct: 367 PDFI 370


>ref|XP_003590217.1| hypothetical protein MTR_1g050070 [Medicago truncatula]
           gi|355479265|gb|AES60468.1| hypothetical protein
           MTR_1g050070 [Medicago truncatula]
          Length = 118

 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +1

Query: 505 LAQGLGVVTNFEAESMAIVLAVEIATRHGWMKIWIEADSSAAICSFKED-KVPWQLRQRW 681
           L   +GV + F ++ + I+LA+E A  HGW  IW+E+DS++A+  FK    VP  LR RW
Sbjct: 26  LCCNIGVASVFHSKVLTIILAMEYAASHGWRNIWLESDSTSALMIFKNSYLVPILLRNRW 85

Query: 682 VRATNKLQEVRITHVFRE 735
             A +   ++  +H+F E
Sbjct: 86  YNARSLGIQIISSHIFHE 103


>ref|XP_002516681.1| conserved hypothetical protein [Ricinus communis]
           gi|223544176|gb|EEF45700.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 180

 Score = 61.6 bits (148), Expect = 4e-07
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
 Frame = +1

Query: 436 LGNLGYGGAGVISRNSTNEIVGVLAQGLGVVTNFEAESMAIVLAVEIATRHGWMKIWIEA 615
           LG LG  GAG + RN +  ++G  A  LG    F  E  +   AV  A   GW+ +W+E+
Sbjct: 57  LGALGPAGAGGLFRNPSGYVMGAFAFSLGTNCAFFVELNSASFAVCKAWEVGWLHLWLES 116

Query: 616 DSSAAICSF--KEDKVPWQLRQRWVRATNKLQEV--RITHVFRE 735
           DS   +  F  K   V W+LR  W R  + +Q++  R+++VFRE
Sbjct: 117 DSIYVVHLFRTKGTSVLWELRLAWSRYLHFVQQMDFRVSYVFRE 160