BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018829
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003624761.1| F-box protein SKIP24 [Medicago truncatula] g...    69   4e-10
ref|XP_002273309.1| PREDICTED: F-box protein SKIP24 [Vitis vinif...    67   1e-09
emb|CAN62570.1| hypothetical protein VITISV_029090 [Vitis vinifera]    67   1e-09
ref|XP_002530951.1| conserved hypothetical protein [Ricinus comm...    67   2e-09
ref|XP_002319735.1| f-box family protein [Populus trichocarpa] g...    67   2e-09

>ref|XP_003624761.1| F-box protein SKIP24 [Medicago truncatula]
           gi|357508969|ref|XP_003624773.1| F-box protein SKIP24
           [Medicago truncatula] gi|355499776|gb|AES80979.1| F-box
           protein SKIP24 [Medicago truncatula]
           gi|355499788|gb|AES80991.1| F-box protein SKIP24
           [Medicago truncatula]
          Length = 135

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 37/90 (41%), Positives = 54/90 (60%)
 Frame = +3

Query: 75  LPDEIWTKILETGIEKSILNHTDLSSFSICCKHFNSLSNDNTLWSSLLTLVFPHDPDGRN 254
           LP+E+W++ILE GIEKS L++ DL   SI C   + LS+D++LW+ L++  FP      +
Sbjct: 4   LPEELWSRILEIGIEKSSLSYKDLCCISISCHLLHRLSSDDSLWNGLISSDFP------S 57

Query: 255 ITDELLLESKKLVYKYRLERHQRNTIDWAR 344
            +   L  S K +YK RLER +      AR
Sbjct: 58  SSASSLASSSKSLYKLRLEREKERLSHMAR 87


>ref|XP_002273309.1| PREDICTED: F-box protein SKIP24 [Vitis vinifera]
           gi|296085868|emb|CBI31192.3| unnamed protein product
           [Vitis vinifera]
          Length = 256

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = +3

Query: 75  LPDEIWTKILETGIEKSILNHTDLSSFSICCKHFNSLSNDNTLWSSLLTLVFPH-DPDGR 251
           LPDE+W +ILE GI  S L + DL   SI C+  + LSND  LWS LL+  FPH +    
Sbjct: 4   LPDEMWRQILEIGIRSSNLTYKDLCCVSISCRRLHRLSNDAVLWSFLLSSDFPHTEASVS 63

Query: 252 NITDELLLESKKLVYKYRLERHQRNTIDWARRAL 353
           N T      S KL+Y+ + +R +       RRA+
Sbjct: 64  NGTVSSSSLSPKLMYRIKFDRERARKAAAHRRAV 97


>emb|CAN62570.1| hypothetical protein VITISV_029090 [Vitis vinifera]
          Length = 256

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
 Frame = +3

Query: 75  LPDEIWTKILETGIEKSILNHTDLSSFSICCKHFNSLSNDNTLWSSLLTLVFPH-DPDGR 251
           LPDE+W +ILE GI  S L + DL   SI C+  + LSND  LWS LL+  FPH +    
Sbjct: 4   LPDEMWRQILEIGIRSSNLTYKDLCCVSISCRRLHRLSNDAVLWSFLLSSDFPHTEASVS 63

Query: 252 NITDELLLESKKLVYKYRLERHQRNTIDWARRAL 353
           N T      S KL+Y+ + +R +       RRA+
Sbjct: 64  NGTVSSSSLSPKLMYRIKFDRERARKAAAHRRAV 97


>ref|XP_002530951.1| conserved hypothetical protein [Ricinus communis]
           gi|223529466|gb|EEF31423.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 261

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
 Frame = +3

Query: 75  LPDEIWTKILETGIEKSILNHTDLSSFSICCKHFNSLSNDNTLWSSLLTLVFPHDPD--- 245
           LPDE+W +I+E GI  S  ++ DL   SICC+  + LSN+++ WS  L+  FP  P    
Sbjct: 4   LPDELWRQIIEFGIRSSNFSYKDLCCISICCRRLHRLSNEHSFWSHFLSSDFPPSPQQQQ 63

Query: 246 -GRNITDELLLESKKLVYKYRLERHQRNTIDWARRAL 353
             +N        + K  YK R E+ +   +   RRA+
Sbjct: 64  HQQNPNPNNYTSTAKSTYKIRFEKEREKKVAAHRRAV 100


>ref|XP_002319735.1| f-box family protein [Populus trichocarpa]
           gi|222858111|gb|EEE95658.1| f-box family protein
           [Populus trichocarpa]
          Length = 273

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
 Frame = +3

Query: 75  LPDEIWTKILETGIEKSILNHTDLSSFSICCKHFNSLSNDNTLWSSLLTLVFP----HDP 242
           +PDE+W +ILE GI+ S LN+ DL   SI C+  + LS +N+LW  LL+  FP     +P
Sbjct: 4   VPDELWRQILEMGIQNSKLNYKDLCCISISCRRLHRLSAENSLWLLLLSSDFPSPNQQNP 63

Query: 243 DGRNITDELLLESKKLVYKYRLERHQRNTIDWARRAL 353
           +  N T      S K  YK + ER +   +   RRA+
Sbjct: 64  NPNNSTS----ASAKSTYKIKFEREKSRKVAAHRRAV 96