BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018500
         (980 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAD22561.1| reverse transcriptase [Brassica rapa subsp. rapa]      59   3e-08
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    54   4e-08
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    54   4e-08
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    56   6e-08
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    56   8e-08

>emb|CAD22561.1| reverse transcriptase [Brassica rapa subsp. rapa]
          Length = 139

 Score = 58.5 bits (140), Expect(2) = 3e-08
 Identities = 23/47 (48%), Positives = 35/47 (74%)
 Frame = +1

Query: 787 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 927
           +K D+ KAYD++EW F++   +K GF+  WI  IM CVRS++FS++L
Sbjct: 72  IKTDMSKAYDRVEWDFLEALFQKLGFHQQWISWIMCCVRSVSFSVLL 118



 Score = 26.6 bits (57), Expect(2) = 3e-08
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 930 GSPFGYFKPSRGVLQGD 980
           G  +G+F+P +G+ QGD
Sbjct: 120 GQSYGHFRPKKGISQGD 136


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 53.5 bits (127), Expect(2) = 4e-08
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +1

Query: 787 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 927
           +K D+ KAYD++EW F++  + K GF   W++ I+FC+ S+++ I+L
Sbjct: 520 IKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILL 566



 Score = 30.8 bits (68), Expect(2) = 4e-08
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 930 GSPFGYFKPSRGVLQGD 980
           GSP G+ KPSRG+ QGD
Sbjct: 568 GSPKGFIKPSRGIRQGD 584


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 53.5 bits (127), Expect(2) = 4e-08
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +1

Query: 787 LKLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 927
           +K D+ KAYD++EW F++  + K GF   W++ I+FC+ S+++ I+L
Sbjct: 154 IKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCISSVSYKILL 200



 Score = 30.8 bits (68), Expect(2) = 4e-08
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 930 GSPFGYFKPSRGVLQGD 980
           GSP G+ KPSRG+ QGD
Sbjct: 202 GSPKGFIKPSRGIRQGD 218


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1094

 Score = 56.2 bits (134), Expect(2) = 6e-08
 Identities = 22/46 (47%), Positives = 34/46 (73%)
 Frame = +1

Query: 790 KLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 927
           K D+ KAYD++EWPF++  L   GFNS WI  +M CV S+++S+++
Sbjct: 303 KTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLI 348



 Score = 27.3 bits (59), Expect(2) = 6e-08
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 930 GSPFGYFKPSRGVLQGD 980
           G PFG+  P RG+ QGD
Sbjct: 350 GQPFGHITPHRGLRQGD 366


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 56.2 bits (134), Expect(2) = 8e-08
 Identities = 21/46 (45%), Positives = 34/46 (73%)
 Frame = +1

Query: 790 KLDLQKAYDQIEWPFVQLTLKKFGFNSCWIEKIMFCVRSLTFSIML 927
           K D+ KAYD++EWPF++  +   GFN+ WI  IM CV S+++S+++
Sbjct: 573 KTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLI 618



 Score = 26.9 bits (58), Expect(2) = 8e-08
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 930 GSPFGYFKPSRGVLQGD 980
           G P+G+  P+RG+ QGD
Sbjct: 620 GQPYGHIIPTRGIRQGD 636