BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018482
         (1189 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003593882.1| F-box protein SKIP19 [Medicago truncatula] g...    69   3e-22
ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumi...    69   3e-22
ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arab...    84   7e-22
ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus ...    65   3e-21
ref|XP_002863254.1| hypothetical protein ARALYDRAFT_332995 [Arab...    70   4e-21

>ref|XP_003593882.1| F-box protein SKIP19 [Medicago truncatula]
           gi|355482930|gb|AES64133.1| F-box protein SKIP19
           [Medicago truncatula]
          Length = 332

 Score = 68.9 bits (167), Expect(2) = 3e-22
 Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVP----DRYNSKA 347
           NWLD+PSDV+L I  KL    +L  A  VC++W +++KDPFLY +I +P    D  +   
Sbjct: 24  NWLDLPSDVVLTIFRKLHTIDLLHRAHNVCTTWRKISKDPFLYHTIDMPNIGTDLSSDFY 83

Query: 348 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLLTSVMKNMTGTYLKS 527
           L++LC                AV  SSG+  +I++ + + TDDLL        +  +L+ 
Sbjct: 84  LEILCQR--------------AVDYSSGQATDINI-EYFGTDDLLRHIA---DSANHLQR 125

Query: 528 LKLASFREITRNQLTASAFRKLHFLEELEL 617
           L+L     +T   L   A  KL  LEEL++
Sbjct: 126 LRLLGCYNVTDEGLCEVA-GKLSHLEELDI 154



 Score = 63.5 bits (153), Expect(2) = 3e-22
 Identities = 33/67 (49%), Positives = 43/67 (64%)
 Frame = +2

Query: 671 AFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQEDLQKECLKK 850
           AF+IA  MP LR L L    ++  GLRAI+ GCPHLE+LD+R C    L+  L K C ++
Sbjct: 195 AFSIAKTMPGLRHLMLVGNKMSKDGLRAILDGCPHLESLDIRQCFNLSLRGSLGKRCREQ 254

Query: 851 IRDLSLP 871
           I+ L LP
Sbjct: 255 IKYLRLP 261


>ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]
           gi|449490588|ref|XP_004158648.1| PREDICTED: F-box
           protein SKIP19-like [Cucumis sativus]
          Length = 311

 Score = 69.3 bits (168), Expect(2) = 3e-22
 Identities = 52/146 (35%), Positives = 78/146 (53%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKALDLL 359
           NWL++P DV  +IL KL   +IL YAQ+VCSSW ++ +DP ++R  ++  RY     D+ 
Sbjct: 16  NWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWR--VIDMRYPCDWWDMD 73

Query: 360 CSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLLTSVMKNMTGTYLKSLKLA 539
            +  +        + + AVKRS G+L   ++ + + TDDLLL       +   L  L+L 
Sbjct: 74  YNLEE--------LCRQAVKRSCGQLIHFNI-EHFGTDDLLL---YITQSCNQLSRLRLV 121

Query: 540 SFREITRNQLTASAFRKLHFLEELEL 617
               I+   L   A  KL  LE+LEL
Sbjct: 122 YCNRISDEGL-VEAVSKLPLLEDLEL 146



 Score = 63.2 bits (152), Expect(2) = 3e-22
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +2

Query: 671 AFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQEDLQKECLKK 850
           A  IA+ MP+LR L ++   LTN+GL AI+ GC  LE+LDLR C   +L   L  +C +K
Sbjct: 185 ALAIAENMPNLRHLHIFGNNLTNKGLEAILDGCSALESLDLRHCFNLNLAGQLGAKCSEK 244

Query: 851 IRDLSLP 871
           I+DL LP
Sbjct: 245 IKDLRLP 251


>ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp.
           lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein
           ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]
          Length = 610

 Score = 68.9 bits (167), Expect(2) = 7e-22
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = +2

Query: 644 FWIYYTNRVAFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQE 823
           F I   +  A  IA+ MP LR L+L    LTN GL AI+  C HL++LDLR C   +L E
Sbjct: 179 FVINMRDHNAIAIAESMPELRHLQLLGNALTNTGLNAILDSCTHLDHLDLRQCYNINLVE 238

Query: 824 DLQKECLKKIRDLSLPSSNVA 886
           D  K+C+++I+ L  P+ ++A
Sbjct: 239 DFMKQCVERIKYLRCPNDSIA 259



 Score = 62.4 bits (150), Expect(2) = 7e-22
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKA---- 347
           NW ++P+++   IL +L V +IL  AQ VC SW ++ KDP ++R I++ +  N       
Sbjct: 8   NWAELPAELTSSILLRLGVVEILENAQKVCRSWRRVCKDPSMWRKIVIDNSGNRDIFKYD 67

Query: 348 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLL----------LTSVM 497
           LD +C              + AV RS G L EI + + + TD LL          L S+ 
Sbjct: 68  LDSMC--------------RHAVDRSQGGLLEIDI-EYFGTDKLLDYIADRFSLSLFSIS 112

Query: 498 KNMTGTYLKSLKLASFREITRNQLTASAFRKLHFLEELEL 617
            N     L+SL+L    +IT ++  A A  KL  LE+LE+
Sbjct: 113 SN-----LRSLRLVRCHQIT-DKGVAEAVVKLPLLEDLEV 146



 Score = 83.6 bits (205), Expect(2) = 1e-21
 Identities = 40/80 (50%), Positives = 53/80 (66%)
 Frame = +2

Query: 656 YTNRVAFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQEDLQK 835
           + N  A  IA+ MP LR L+L+   LTN GL AI+ GCPHLE+LDLR C   DL  DL+K
Sbjct: 514 FNNEEALAIAESMPELRHLQLFGNILTNVGLNAILDGCPHLEHLDLRKCSNVDLTGDLEK 573

Query: 836 ECLKKIRDLSLPSSNVAPPP 895
            C+++I+DL  P+ + A  P
Sbjct: 574 RCVERIKDLKRPTDSTAGHP 593



 Score = 46.6 bits (109), Expect(2) = 1e-21
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKALDLL 359
           NW ++P ++   IL +L    IL  AQ VC SW ++ KDP ++R I          +D L
Sbjct: 346 NWAELPPELTSSILGRLGTIDILENAQKVCRSWRRVCKDPSMWRKI---------DMDNL 396

Query: 360 CSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWC--TDDLLLTSVMKNMTGTYLKSLK 533
                 G  L + + + AV RS G L EI +   W   TD+LL     ++   + L++L+
Sbjct: 397 GDLGAMGYDLEI-MCRHAVDRSQGGLVEIDI---WYFGTDELLNYIADRS---SNLRTLR 449

Query: 534 LASFREITRNQLTASAFRKLHFLEELEL 617
           L     I  ++    A  KL  +E LEL
Sbjct: 450 LIMCYPIA-DEGFIEAVVKLPLIEYLEL 476


>ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223534044|gb|EEF35763.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 305

 Score = 65.5 bits (158), Expect(2) = 3e-21
 Identities = 33/71 (46%), Positives = 45/71 (63%)
 Frame = +2

Query: 659 TNRVAFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQEDLQKE 838
           +N  A  I   MPHLR L+++   LTN G++AI+ GCPHLE LDLR C    L+ +L   
Sbjct: 185 SNEEALAIGQWMPHLRYLQIFGNKLTNDGVQAILDGCPHLEFLDLRQCFNVHLEGELGML 244

Query: 839 CLKKIRDLSLP 871
           C ++I+DL  P
Sbjct: 245 CGERIKDLRRP 255



 Score = 63.9 bits (154), Expect(2) = 3e-21
 Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYN----SKA 347
           NW ++P DV  +IL K+  F IL  AQFVCSSW  + KDP ++RS+ +    +       
Sbjct: 18  NWAELPRDVTALILDKVGAFDILGSAQFVCSSWNSVCKDPSMWRSVEIHPLCDFWDLPFD 77

Query: 348 LDLLCSNNKKGMVLGLRVLKDAVKRSSGELKEISLAKSWCTDDLLLTSVMKNMTGTYLKS 527
           L+ LC N              AV RS G L  IS+ + + TD L+     ++   ++LK 
Sbjct: 78  LEALCRN--------------AVDRSRGGLISISI-EYFATDSLIKYIADRS---SHLKR 119

Query: 528 LKLASFREITRNQLTASAFRKLHFLEELEL 617
           L+L S   ++ +   + A +K   LEEL++
Sbjct: 120 LRLLSSYTLS-DAAFSKAAKKFPLLEELDI 148


>ref|XP_002863254.1| hypothetical protein ARALYDRAFT_332995 [Arabidopsis lyrata subsp.
           lyrata] gi|297309088|gb|EFH39513.1| hypothetical protein
           ARALYDRAFT_332995 [Arabidopsis lyrata subsp. lyrata]
          Length = 296

 Score = 70.1 bits (170), Expect(2) = 4e-21
 Identities = 34/80 (42%), Positives = 52/80 (65%)
 Frame = +2

Query: 647 WIYYTNRVAFTIADCMPHLRGLRLYLTCLTNQGLRAIIKGCPHLENLDLRGCCYNDLQED 826
           +++  N  A  IA+ MP+LR ++L+   + N GL AI+ GCPH+E+LDLR C   +L ED
Sbjct: 181 FLFRPNINAIVIAESMPNLRHIQLFGNEINNTGLNAILDGCPHVEHLDLRKCFNINLVED 240

Query: 827 LQKECLKKIRDLSLPSSNVA 886
           ++K C ++IR L  P  + A
Sbjct: 241 IEKRCSERIRVLRRPYDSTA 260



 Score = 58.5 bits (140), Expect(2) = 4e-21
 Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
 Frame = +3

Query: 180 NWLDMPSDVMLVILFKLDVFQILCYAQFVCSSWLQLAKDPFLYRSILVPDRYNSKALDLL 359
           NW ++PS++   IL +L    IL  AQ VC+SW +++ DP ++R I           D+ 
Sbjct: 17  NWAELPSELTFSILNRLGAIDILENAQKVCTSWRRVSLDPLMWRKI-----------DMH 65

Query: 360 CSNNKKGMVLGLR-VLKDAVKRSSGELKEISLAKSWCTDDLLLTSVMKNMTGTYLKSLKL 536
              +   M+     + + AV RS G L EI +   + TDDLL     ++   + L+SL+L
Sbjct: 66  YLGDMGSMIYDFESMCRHAVDRSQGGLVEIDI-WHFGTDDLLNYIADRS---SNLRSLRL 121

Query: 537 ASFREITRNQLTASAFRKLHFLEELEL 617
           A   +IT   +T  A  KL  LE+L++
Sbjct: 122 AMCNQITDEGVT-EAVVKLPLLEDLDV 147