BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018467
         (1284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containi...   306   1e-80
ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea ma...   252   2e-64
ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containi...   251   3e-64
ref|XP_002525536.1| pentatricopeptide repeat-containing protein,...   249   8e-64
ref|XP_002468625.1| hypothetical protein SORBIDRAFT_01g049260 [S...   248   2e-63

>ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
            mitochondrial-like [Vitis vinifera]
          Length = 582

 Score =  306 bits (783), Expect = 1e-80
 Identities = 154/300 (51%), Positives = 205/300 (68%)
 Frame = +1

Query: 19   RNSDFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXXTEKAFAFIPVCCSNYDLSRGYVIR 198
            RN D CSLIIDN GR+ DY+                T KAF F+PV   +      +V +
Sbjct: 266  RNYDICSLIIDNCGRLGDYETMRCLLKDFNSKRVCLTSKAFGFVPVFTLSKASIMDFVRK 325

Query: 199  IIEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSF 378
            +IE+L+ VGG CR SG+FGLI+M     +F++  FVME T R+TSYYN+L+   CR C+F
Sbjct: 326  LIEVLDDVGGVCRRSGLFGLIEMFSVSGSFEMAKFVMEITERKTSYYNILVREMCRKCNF 385

Query: 379  QDAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFEVI 558
            ++A  L DEMR FGC PNA +YNYLL +LCKN+R  E+  +  +M+E G  PD +TFE+ 
Sbjct: 386  KEARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDALTFEIF 445

Query: 559  ICHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYK 738
            I +  RLG+LDFA++FL+QM+SRG+EPR TTHAAFIKGYF+  R+ EAY+YVVD    YK
Sbjct: 446  IYYTYRLGKLDFAIKFLDQMVSRGLEPRLTTHAAFIKGYFHSRRYEEAYEYVVDSGVTYK 505

Query: 739  SSGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 918
               N+ YSLLASL  ++  ++ A++IL++M+EKGLKPNF VY +VL+ L KSG   L  D
Sbjct: 506  WPSNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEHLDKSGREDLAGD 565


>ref|NP_001167893.1| uncharacterized protein LOC100381604 [Zea mays]
            gi|223944699|gb|ACN26433.1| unknown [Zea mays]
            gi|414864420|tpg|DAA42977.1| TPA: hypothetical protein
            ZEAMMB73_690405 [Zea mays]
          Length = 430

 Score =  252 bits (643), Expect = 2e-64
 Identities = 133/298 (44%), Positives = 185/298 (62%), Gaps = 4/298 (1%)
 Frame = +1

Query: 37   SLIIDNIGRMEDYDXXXXXXXXXXXXXXXXTEKAFAFI-PVCCSNYDLSRGYVIR-IIEM 210
            +L+++N GR++DY                 T++AFAF+ P   S+   S     R ++  
Sbjct: 109  NLLVENAGRLDDYGAMSRALALMSERRLSLTDRAFAFLAPSSGSSRSGSVEDAARAVLRA 168

Query: 211  LNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQDAY 390
            L+ VGG CR SG+F L+K L S+  FD  + V+EETAR+  YYNVL+ AKC++  F  A 
Sbjct: 169  LDGVGGPCRASGVFSLVKALASIGEFDAAVLVIEETARKVRYYNVLVAAKCKAGDFVGAR 228

Query: 391  VLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEF--GYVPDEVTFEVIIC 564
             +FDEMRR G DP+AN++NYLLG L K  R  E+  L   ME      +P  +T+E++  
Sbjct: 229  EVFDEMRRSGSDPDANTWNYLLGCLLKKGRLAEACGLVEAMERLKRSEIPSSLTYEILTY 288

Query: 565  HACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKSS 744
            HAC+ G++D A++ L+QM S  + PR T H+AFIKGYFY  R  +A KYV DM  + + S
Sbjct: 289  HACKAGKMDSAMQILDQMFSENLTPRITIHSAFIKGYFYAGRIEDACKYVSDMSTRDRHS 348

Query: 745  GNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 918
             N NYSLLA LL KS R ++A  +L ++MEKGL+P+   Y+KV KDLHK G G L  +
Sbjct: 349  VNRNYSLLAKLLWKSGRTIDAGRVLYELMEKGLRPDHSAYVKVAKDLHKMGKGNLACE 406


>ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
            gi|449498723|ref|XP_004160616.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g05670,
            mitochondrial-like [Cucumis sativus]
          Length = 494

 Score =  251 bits (641), Expect = 3e-64
 Identities = 126/299 (42%), Positives = 189/299 (63%)
 Frame = +1

Query: 22   NSDFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXXTEKAFAFIPVCCSNYDLSRGYVIRI 201
            NSD  SL+IDN GR++DY+                  KAF F+ +  SN    +  V+++
Sbjct: 180  NSDVYSLLIDNFGRLDDYEGILPVLIEFGLKGIELNHKAFGFL-LPLSNEHSMKLSVVKL 238

Query: 202  IEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQ 381
            +++LN+ GG+CR SGI  LI+M CSL +F +  FV+E T +R+S+Y +++  KC+   F+
Sbjct: 239  VKLLNEAGGTCRLSGIMALIEMFCSLGSFGMAKFVIEITEKRSSFYYIIVREKCKQKDFE 298

Query: 382  DAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFEVII 561
             A    DEMR+ GC P+A   NYLL +LCKN +  E+  L  +M E    P+ +TFE+II
Sbjct: 299  GARCTLDEMRQVGCIPDAGILNYLLSSLCKNDKFGEAHNLLEEMLEQNCSPNSLTFEIII 358

Query: 562  CHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKS 741
            CH C++G ++ A+ +L+ M++ G+ PR +THAAF+K YF   R+ EAY+Y VD   KY +
Sbjct: 359  CHLCKIGNIESALGYLDMMVAGGLMPRLSTHAAFVKSYFSSQRYEEAYQYAVDSSLKYVT 418

Query: 742  SGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 918
            + N  YSLLA+L  K   +V+A++IL ++M+ GLKP+F VY ++LK L   G G L  D
Sbjct: 419  TQNATYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLLKKLQVQGRGDLAND 477


>ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535215|gb|EEF36894.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 430

 Score =  249 bits (637), Expect = 8e-64
 Identities = 125/292 (42%), Positives = 190/292 (65%)
 Frame = +1

Query: 22  NSDFCSLIIDNIGRMEDYDXXXXXXXXXXXXXXXXTEKAFAFIPVCCSNYDLSRGYVIRI 201
           NSD CSL+IDN G ++DY                 T+KAF ++ +  S  +L +     +
Sbjct: 122 NSDICSLVIDNCGHLDDYKAMRCLLDGFSLQRLFLTKKAFEYLQLTSSKEELLKKATQNV 181

Query: 202 IEMLNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQ 381
           +++L ++GG+   +G+  LI+M   L +FD+  FV+E+T R+ SYYNVLI   CR   F+
Sbjct: 182 VDILQEIGGTSYGTGVPSLIEMFSDLGSFDMAKFVIEKTGRKLSYYNVLIRELCRRGDFK 241

Query: 382 DAYVLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEFGYVPDEVTFEVII 561
            A  L DE+ + GC+P+A++YNY++ +L KN +  ++ ++F +M++    PD +TFE+ I
Sbjct: 242 AARDLMDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEMQDNDCPPDALTFEIFI 301

Query: 562 CHACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKS 741
            ++C  G+LD A EF + M++RG+EPR  THAAFIKG+F   ++ +AYKYVV   DKY  
Sbjct: 302 YNSCNEGKLDNAFEFFDDMVARGLEPRLLTHAAFIKGFFNSQQYEKAYKYVVGSDDKY-- 359

Query: 742 SGNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSG 897
           S NVNYSLLA+L  K   +V+A  IL +M++KGL+P+F V++KV K L KSG
Sbjct: 360 SSNVNYSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHLMKSG 411


>ref|XP_002468625.1| hypothetical protein SORBIDRAFT_01g049260 [Sorghum bicolor]
            gi|241922479|gb|EER95623.1| hypothetical protein
            SORBIDRAFT_01g049260 [Sorghum bicolor]
          Length = 422

 Score =  248 bits (633), Expect = 2e-63
 Identities = 129/298 (43%), Positives = 182/298 (61%), Gaps = 4/298 (1%)
 Frame = +1

Query: 37   SLIIDNIGRMEDYDXXXXXXXXXXXXXXXXTEKAFAFIPVCC--SNYDLSRGYVIRIIEM 210
            +L+++N GR+ D                  T++AFAF+ +    S           ++  
Sbjct: 109  NLLVENTGRLGDCGAMSRALALMSERMLPLTDRAFAFLALSSGSSRSGSVEDSTTSVLRA 168

Query: 211  LNKVGGSCRNSGIFGLIKMLCSLNAFDLGMFVMEETARRTSYYNVLIWAKCRSCSFQDAY 390
            L+ VGG CR SG+F L+K L S+  FD  + V+EET R+  YYNVL+ AKC++  F  A 
Sbjct: 169  LDGVGGPCRASGVFSLVKALASIGEFDAAVSVIEETTRKVRYYNVLVAAKCKAGDFVGAR 228

Query: 391  VLFDEMRRFGCDPNANSYNYLLGTLCKNSRTVESFKLFGKMEEF--GYVPDEVTFEVIIC 564
             +FDEMR+ G DP+AN++NYLLG L KN R  E+  L   ME      +P+ +T+E++  
Sbjct: 229  EVFDEMRKSGSDPDANTWNYLLGCLLKNGRLAEACGLVEAMERLKCSEIPNSLTYEILTY 288

Query: 565  HACRLGRLDFAVEFLNQMMSRGIEPRHTTHAAFIKGYFYGNRFVEAYKYVVDMCDKYKSS 744
            HAC+ G++D A++ LNQM S  + PR T H+AFIKGYFY  R  +A KYV DM  + + S
Sbjct: 289  HACKAGKMDSAMQILNQMFSENLTPRITIHSAFIKGYFYAGRIEDACKYVNDMSTRDRHS 348

Query: 745  GNVNYSLLASLLHKSRRVVEAREILVDMMEKGLKPNFPVYIKVLKDLHKSGLGYLVAD 918
             N NYSLLA LL KS R V+A  +L ++M+KGL+P+   Y+KV KDLHK G G L ++
Sbjct: 349  VNRNYSLLAKLLRKSGRTVDAGRVLYELMDKGLRPDHSAYVKVAKDLHKMGRGDLASE 406