BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018465
         (2943 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vit...  1137   0.0  
ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus co...  1095   0.0  
ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|2...  1081   0.0  
ref|XP_002319052.1| predicted protein [Populus trichocarpa] gi|2...  1058   0.0  
ref|NP_175851.1| 5'-3' exoribonuclease 4 [Arabidopsis thaliana] ...  1041   0.0  

>ref|XP_002271987.2| PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera]
          Length = 950

 Score = 1137 bits (2940), Expect = 0.0
 Identities = 582/932 (62%), Positives = 679/932 (72%), Gaps = 17/932 (1%)
 Frame = -1

Query: 2943 PCFHPDGKPPPTTYDDVFKSMFDYIDHLFTMVRPRKLLYMAIDGVAPRAKMNQQRTRRFR 2764
            PCFHPDGKP PTTYDDVFKS+FDYIDHLF++VRPR+LLYMAIDGVAPRAKMNQQR+RRFR
Sbjct: 58   PCFHPDGKPAPTTYDDVFKSIFDYIDHLFSLVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 117

Query: 2763 AAKDSAEAQAXXXXXXXXXXXXXXXXXXXXXXETSDSNVITPGTPFMAVLSVALQYYIHS 2584
            AAKD+AEA+A                      ETSDSNVITPGT FMAVLSVALQYYIHS
Sbjct: 118  AAKDAAEAEAEEERLRKEFEVEGKMLSPKEKPETSDSNVITPGTKFMAVLSVALQYYIHS 177

Query: 2583 RLNHNLGWRFTKDTSSV*IYSWSHGAALGGYLKVILSDSNVPGEGEHKIMSYIRLQRNLP 2404
            RLN N GW  TK                     VILSDSNVPGEGEHKIMSYIR QRNL 
Sbjct: 178  RLNRNPGWCSTK---------------------VILSDSNVPGEGEHKIMSYIRSQRNLL 216

Query: 2403 GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVISLPGQQEKCFQCGQVGHLAAECHG 2224
            GFNPNTRHCLYGLDADLIMLSLATHEVHFSILRE+I+ PGQQEKC+ CGQVGHLAAEC G
Sbjct: 217  GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREMITPPGQQEKCYLCGQVGHLAAECRG 276

Query: 2223 SSNGKAIDETPIHKKKYQFLNIWVLREYLQYDMKIPNCPIRLNFERLVDDFVFMCFFVGN 2044
                + +D+TPIHKKKYQFLNIWVLREYLQYD++I N P  +NFERL+DDFVF+CFFVGN
Sbjct: 277  I---EVVDDTPIHKKKYQFLNIWVLREYLQYDLEILNPPFEINFERLLDDFVFLCFFVGN 333

Query: 2043 DFLPHMPTLEIREGAINLLMHVYKREFAAMGGYLTDAGEVLLERVEHFIQSVAMNEDKIF 1864
            DFLPHMPTLEIREGAINLLMHVY+REF+AMGGYLTDAGEVLL+RVEHFI+SVA+ ED+IF
Sbjct: 334  DFLPHMPTLEIREGAINLLMHVYRREFSAMGGYLTDAGEVLLDRVEHFIESVAVYEDQIF 393

Query: 1863 QKRGRIQQAQENNEQMRM--KRENPGEVRVTVSDKVKLGEPGYKERYYMEKFNLSNEDEI 1690
            QKR RIQQA ENNE+M++  KRE   E R  V DKVKLGEPGYKERYY EKFNLSN +EI
Sbjct: 394  QKRTRIQQALENNEEMKLRTKREASEEPRAPVEDKVKLGEPGYKERYYTEKFNLSNPEEI 453

Query: 1689 DEVKKDVVLKYVEGLCWVMRYYYQGVCSWHWFYPYHYAPFASDLKDLPELEITLFLGQPF 1510
            D+V+K++V+KYVEGLCWV RYYYQGVCSW W+YP+HYAPFASDLKDL +LEIT FLG+PF
Sbjct: 454  DKVRKEIVMKYVEGLCWVCRYYYQGVCSWQWYYPFHYAPFASDLKDLVDLEITFFLGEPF 513

Query: 1509 KPFDQLMGTLPAASSNALPEHYRTLMTDPSSPIRDYYPEDFEVDMNGKRFAWQGVVKLPF 1330
            KPFDQLMGTLPAAS+++LPE+YR LMTD SSPI D+YP DFE+DMNGKR+AWQGV KLPF
Sbjct: 514  KPFDQLMGTLPAASASSLPENYRKLMTDQSSPILDFYPSDFEIDMNGKRYAWQGVAKLPF 573

Query: 1329 IDERKXXXXXXXXXXXXXXXXXXRNSLMYDLLYVHMYHPLASYISQIYHQPPIFHTSPN- 1153
            IDE K                  RNS+M+DLLYVH  HPLA+ I   YH    + +SP  
Sbjct: 574  IDEEKLLAETKKLEVTLTVEEQVRNSVMFDLLYVHAVHPLATQIIYYYH---FYQSSPPL 630

Query: 1152 -----AINTQASGGMNGYLWLCERNAYRSIYPSPIKGLGNIEKNSVINATYSNPPRHQHI 988
                  I+  ASGGMNGYLWLCERN +RS +PS I GL NIE N V N TY NPP H+HI
Sbjct: 631  ARVIWPIDINASGGMNGYLWLCERNGWRSEFPSSISGLQNIEHNQVFNVTYVNPPHHKHI 690

Query: 987  PEPPVGVNMPQKIINPSDVKPSPVLWHEDNSSRRHQARDRPQVSGAISGPHLGEVSHRLL 808
            PEPP+GV MP+K++ P D+KP PVLWHEDN  RR Q R+RPQV  AISGP LGE +HRLL
Sbjct: 691  PEPPMGVVMPEKVLRPFDIKPLPVLWHEDNGGRRQQGRERPQVPRAISGPLLGEAAHRLL 750

Query: 807  RNTLQMKP---STSALLDYPANWYHVPNNHTVDRPRPAGPSGYERGYGQDQNYFHGNFSN 637
            +NTL +KP   S+  LL  P  + ++P+N+ V+RPRPAGPSGYE+G+  D NY++G++ N
Sbjct: 751  KNTLNIKPNNTSSGMLLQTP--YRNMPSNYVVNRPRPAGPSGYEKGFNGDSNYYYGHYDN 808

Query: 636  PRGTIVNSRSAPSYNEMWKXXXXXXXXXXXXXXXYHLQT-----GKSSLTIKDG-PTYQH 475
            PRG +   R  PS N M                  +  +     G S+LTI++G  T Q 
Sbjct: 809  PRGALSIPRFPPSPNNMQGNRQNFRVQDRSTFQDQYRNSRTGIMGMSTLTIEEGVRTRQP 868

Query: 474  SVAPLRKPNTLFSPSPQQMPVQYVGQPPRPPTDWIDKPAYENPGMYAIHPEMYENTGMYV 295
             V P R P+   + +     VQ    PP PP+ WI++ A               N GM V
Sbjct: 869  IVRPSRMPSAADTLNTNNQFVQN-KSPPAPPSKWIERQA-------------TGNAGMIV 914

Query: 294  RQPEVLSSNVYEKQVKMLYLARTEAPLETLEP 199
            RQ + +S+  YEK +K +Y  + +   ++ +P
Sbjct: 915  RQQDNVSAGTYEKPIKKVYQVKMQHLQDSSDP 946


>ref|XP_002512252.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223548213|gb|EEF49704.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 964

 Score = 1095 bits (2832), Expect = 0.0
 Identities = 559/930 (60%), Positives = 659/930 (70%), Gaps = 15/930 (1%)
 Frame = -1

Query: 2943 PCFHPDGKPPPTTYDDVFKSMFDYIDHLFTMVRPRKLLYMAIDGVAPRAKMNQQRTRRFR 2764
            PCFHPDGKPPP TYDDVFKS+FDYIDHLFT+VRPRKLL+MAIDGVAPRAKMNQQR+RRFR
Sbjct: 62   PCFHPDGKPPPPTYDDVFKSIFDYIDHLFTLVRPRKLLFMAIDGVAPRAKMNQQRSRRFR 121

Query: 2763 AAKDSAEAQAXXXXXXXXXXXXXXXXXXXXXXETSDSNVITPGTPFMAVLSVALQYYIHS 2584
            AAKD+AEA+A                      ETSDSNVITPGT FMAVLS  LQYY+  
Sbjct: 122  AAKDAAEAEAEEERLRKEFEAEGKLLSPKEKPETSDSNVITPGTQFMAVLSTGLQYYVQM 181

Query: 2583 RLNHNLGWRFTKDTSSV*IYSWSHGAALGGYLKVILSDSNVPGEGEHKIMSYIRLQRNLP 2404
            RLNHN GW++TK                     VILSD+NVPGEGEHK+MSYIRLQRNL 
Sbjct: 182  RLNHNPGWKYTK---------------------VILSDANVPGEGEHKVMSYIRLQRNLS 220

Query: 2403 GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVISLPGQQEKCFQCGQVGHLAAECHG 2224
            GFNPNTRHCLYGLDADLIML+LATHE+HFSILRE+++ PGQQEKCF CGQ GHLAA+C G
Sbjct: 221  GFNPNTRHCLYGLDADLIMLALATHEIHFSILREMVTFPGQQEKCFSCGQTGHLAADCRG 280

Query: 2223 SSNGKAID-----ETPIHKKKYQFLNIWVLREYLQYDMKIPNCPIRLNFERLVDDFVFMC 2059
                  +D     + PIHKKKYQFLNIWVLREYLQY++ +PN P+ +NFER++DDFVF+C
Sbjct: 281  KPGDNPLDWNVEDDVPIHKKKYQFLNIWVLREYLQYELDVPNPPLEINFERILDDFVFLC 340

Query: 2058 FFVGNDFLPHMPTLEIREGAINLLMHVYKREFAAMGGYLTDAGEVLLERVEHFIQSVAMN 1879
            FFVGNDFLPHMPTLEIREGAINLLMHVY+REF+AMGGYLTDAGEV L+RVEHFIQSVA+ 
Sbjct: 341  FFVGNDFLPHMPTLEIREGAINLLMHVYRREFSAMGGYLTDAGEVNLDRVEHFIQSVAIY 400

Query: 1878 EDKIFQKRGRIQQAQENNEQMRMK--RENPGEVRVTVSDKVKLGEPGYKERYYMEKFNLS 1705
            E++IFQKR RIQQ  ENNE+MR+K  RE+  E++    DKVKLGEPGYKERYY EKF L+
Sbjct: 401  EEQIFQKRTRIQQFLENNEEMRLKARRESSEEIQTPAVDKVKLGEPGYKERYYAEKFGLT 460

Query: 1704 NEDEIDEVKKDVVLKYVEGLCWVMRYYYQGVCSWHWFYPYHYAPFASDLKDLPELEITLF 1525
              DEID+V+ DVVLKYVEGLCWV RYYYQGVCSW WFYPYHYAPFASDLK L +LEIT F
Sbjct: 461  TPDEIDKVRNDVVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKGLADLEITFF 520

Query: 1524 LGQPFKPFDQLMGTLPAASSNALPEHYRTLMTDPSSPIRDYYPEDFEVDMNGKRFAWQGV 1345
            LG+PFKPFDQLMGTLPAASSNALPE YR LMTD SSPI  ++P DFE+DMNGKRFAWQG+
Sbjct: 521  LGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDSSSPISRFFPLDFEIDMNGKRFAWQGI 580

Query: 1344 VKLPFIDERKXXXXXXXXXXXXXXXXXXRNSLMYDLLYVHMYHPLASYI---SQIYHQPP 1174
             KLPFIDERK                  RNS+M DLLYVH  HP+A+ +    Q ++  P
Sbjct: 581  AKLPFIDERKLLAQTKKLESTLTEEERLRNSVMLDLLYVHPAHPMAAEVIAHYQGFNSLP 640

Query: 1173 IFHTSPNAINTQASGGMNGYLWLCERNAYRSIYPSPIKGLGNIEKNSVINATYSNPPRHQ 994
             +   P AI+T AS GMNGYLWL ERN +RS   SP+ G  +IE N V+N TY NP  H+
Sbjct: 641  QYQRKPWAIDTNASAGMNGYLWLSERNMWRSTIASPVNGFPDIEHNQVLNITYLNPINHR 700

Query: 993  HIPEPPVGVNMPQKIINPSDVKPSPVLWHEDNSSRRHQARDRPQVSGAISGPHLGEVSHR 814
            HIPEPP GV MP+KI+ P D+KP P+LWHED+  RR Q R+RPQV+ AI+GP LGE +HR
Sbjct: 701  HIPEPPNGVVMPEKILKPLDIKPFPMLWHEDHGGRRQQGRERPQVARAIAGPLLGEAAHR 760

Query: 813  LLRNTLQMKP--STSALLDYPANWYHVPNNHTVDRPRPAGPSGYERGYGQDQNYFHGNFS 640
            L++NTL ++P  S+S  L+    + ++P N T +RPRPAGPSGYERGY  D NY++G+ +
Sbjct: 761  LVKNTLNIRPNGSSSKFLE-QQTYRNIPGNSTFNRPRPAGPSGYERGYSNDPNYYYGHHN 819

Query: 639  NPRGTIVNSRSAPSYNEMWKXXXXXXXXXXXXXXXYH--LQTGKSSLTIKDG-PTYQHSV 469
              +G + N RS    N +                  +  L+TG S+LT+++   +   +V
Sbjct: 820  YQQGLMSNPRSPLFSNGVSSNRHNFRTQDRVQYHEQYRDLKTGMSALTMEENVKSRPPAV 879

Query: 468  APLRKPNTLFSPSPQQMPVQYVGQPPRPPTDWIDKPAYENPGMYAIHPEMYENTGMYVRQ 289
               R  NT +S S QQ   Q +G  P PP  WI K                 +  MY RQ
Sbjct: 880  MSQRTQNTGYSSSLQQQFEQNLGALPSPPAKWIGKAT-------------DTDAEMYFRQ 926

Query: 288  PEVLSSNVYEKQVKMLYLARTEAPLETLEP 199
             E +     EKQ K +Y  +T A  E   P
Sbjct: 927  -ETMLRGANEKQAKQIYQVKTRAAQEMSNP 955


>ref|XP_002328516.1| predicted protein [Populus trichocarpa] gi|222838231|gb|EEE76596.1|
            predicted protein [Populus trichocarpa]
          Length = 948

 Score = 1081 bits (2796), Expect = 0.0
 Identities = 555/925 (60%), Positives = 654/925 (70%), Gaps = 13/925 (1%)
 Frame = -1

Query: 2943 PCFHPDGKPPPTTYDDVFKSMFDYIDHLFTMVRPRKLLYMAIDGVAPRAKMNQQRTRRFR 2764
            PCFHP+GKP P TYDDVFKS+F YIDHLF +VRPRKLL+MAIDGVAPRAKMNQQR+RRFR
Sbjct: 62   PCFHPEGKPAPATYDDVFKSIFVYIDHLFALVRPRKLLFMAIDGVAPRAKMNQQRSRRFR 121

Query: 2763 AAKDSAEAQAXXXXXXXXXXXXXXXXXXXXXXETSDSNVITPGTPFMAVLSVALQYYIHS 2584
            AAKD+A+A+A                      ET DSNVITPGT FMAVLS+ALQYYI S
Sbjct: 122  AAKDAAQAEAEEERLRKEFEAEGVLLSVKEKPETRDSNVITPGTQFMAVLSIALQYYIQS 181

Query: 2583 RLNHNLGWRFTKDTSSV*IYSWSHGAALGGYLKVILSDSNVPGEGEHKIMSYIRLQRNLP 2404
            RLNHN GW+ TK                     VILSD+NVPGEGEHKIMSYIRLQRN+P
Sbjct: 182  RLNHNPGWQNTK---------------------VILSDANVPGEGEHKIMSYIRLQRNIP 220

Query: 2403 GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVISLPGQQEKCFQCGQVGHLAAECHG 2224
            GFN NTRHCLYGLDADLIMLSLATHEVHFSILRE++  PGQQ+KCF CGQ GHLAAEC G
Sbjct: 221  GFNSNTRHCLYGLDADLIMLSLATHEVHFSILREMVIFPGQQDKCFLCGQAGHLAAECRG 280

Query: 2223 SSNGKA-----IDETPIHKKKYQFLNIWVLREYLQYDMKIPNCPIRLNFERLVDDFVFMC 2059
                 A     +D+TPIHKKKYQFLNIWVLREYLQYD+ IPN P  ++FE++VDDFVFMC
Sbjct: 281  KQGDDALDWNVVDDTPIHKKKYQFLNIWVLREYLQYDLDIPNPPFAIDFEKIVDDFVFMC 340

Query: 2058 FFVGNDFLPHMPTLEIREGAINLLMHVYKREFAAMGGYLTDAGEVLLERVEHFIQSVAMN 1879
            FFVGNDFLPHMPTLEIREGAINLLMH+Y+REF+AMGGYLT AGEV L++VEHFIQSVA+ 
Sbjct: 341  FFVGNDFLPHMPTLEIREGAINLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQSVAVY 400

Query: 1878 EDKIFQKRGRIQQAQENNEQMRMK--RENPGEVRVTVSDKVKLGEPGYKERYYMEKFNLS 1705
            E++IFQKR RIQQA ENNE+M+ K  R+   E++    DKVKLGEPGYKERYY EKF+LS
Sbjct: 401  EEQIFQKRARIQQAFENNEEMKHKARRDLSEEIQAPPVDKVKLGEPGYKERYYAEKFDLS 460

Query: 1704 NEDEIDEVKKDVVLKYVEGLCWVMRYYYQGVCSWHWFYPYHYAPFASDLKDLPELEITLF 1525
            NE+EID+V KDVVLKYVEGLCWV RYYYQGVCSW WFYPYHYAPFASD+KDL E+EIT F
Sbjct: 461  NEEEIDKVTKDVVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDIKDLDEMEITFF 520

Query: 1524 LGQPFKPFDQLMGTLPAASSNALPEHYRTLMTDPSSPIRDYYPEDFEVDMNGKRFAWQGV 1345
            LG+PFKPFDQLMGTLPAASSNALPE YR LMTDPSSPI  ++P DFE+DMNGKRFAWQG+
Sbjct: 521  LGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSSPIHQFFPSDFEIDMNGKRFAWQGI 580

Query: 1344 VKLPFIDERKXXXXXXXXXXXXXXXXXXRNSLMYDLLYVHMYHPLASYISQIYH---QPP 1174
             KLPFIDERK                  RNS+M DLLYVH  HPL+  +   YH   + P
Sbjct: 581  AKLPFIDERKLLAQTKKLERTLMEEEQVRNSVMRDLLYVHPVHPLSQQVISYYHHNYRLP 640

Query: 1173 IFHTSPNAINTQASGGMNGYLWLCERNAYRSIYPSPIKGLGNIEKNSVINATYSNPPRHQ 994
            +       I+T+ASGGMNGYLWL ERN +RS+ PSPI GL  +E N V+N TY  P  H+
Sbjct: 641  VSERIALKIDTRASGGMNGYLWLSERNVWRSVVPSPINGLPTLEYNQVLNITYLTPSSHR 700

Query: 993  HIPEPPVGVNMPQKIINPSDVKPSPVLWHEDNSSRRHQARDRPQVSGAISGPHLGEVSHR 814
            HIPEPP GV MP+KI+ P+D+K  P LWHEDN  RR Q R+RPQV  A++GP LGE +HR
Sbjct: 701  HIPEPPEGVVMPEKILKPTDIKLFPTLWHEDN-GRRQQGRERPQVPRAVAGPVLGEAAHR 759

Query: 813  LLRNTLQMKPSTSALLDYPANWYHVPNNHTVDRPRPAGPSGYERGYGQDQNYFHGNFSNP 634
            L++NTL +KP+ S+             N+T +RPRPAGP+GY RGYG D NY + +++N 
Sbjct: 760  LVKNTLNIKPNGSS----------SRGNYTFNRPRPAGPAGYGRGYGDDPNYHYAHYNNQ 809

Query: 633  RGTIVNSRSAPSYNEMW--KXXXXXXXXXXXXXXXYHLQTGKSSLTIKDG-PTYQHSVAP 463
            +G + N     S N +   +               + L TG S+LT+++   +   +V  
Sbjct: 810  QGLMSNHMYPVSSNGVQGNRHNSRPQDRVQYHQQYHDLSTGVSALTVEENFRSRAPAVIS 869

Query: 462  LRKPNTLFSPSPQQMPVQYVGQPPRPPTDWIDKPAYENPGMYAIHPEMYENTGMYVRQPE 283
             R PN  ++ +         G  P PPT+WI+K A               + GMY RQ +
Sbjct: 870  PRIPNPGYTTNLYNQFEHNTGPLPSPPTNWINKTA-------------AGDAGMYFRQ-D 915

Query: 282  VLSSNVYEKQVKMLYLARTEAPLET 208
              S    EKQ+K +Y  +T+   ET
Sbjct: 916  TTSRGPNEKQLKQVYQVKTQVAQET 940


>ref|XP_002319052.1| predicted protein [Populus trichocarpa] gi|222857428|gb|EEE94975.1|
            predicted protein [Populus trichocarpa]
          Length = 965

 Score = 1058 bits (2736), Expect = 0.0
 Identities = 549/928 (59%), Positives = 648/928 (69%), Gaps = 16/928 (1%)
 Frame = -1

Query: 2943 PCFHPDGKPPPTTYDDVFKSMFDYIDHLFTMVRPRKLLYMAIDGVAPRAKMNQQRTRRFR 2764
            PCFHP+GKP P TYDDVFKS+F YIDHLF +VRPRKLL+MAIDGVAPRAKMNQQR+RRFR
Sbjct: 62   PCFHPEGKPAPATYDDVFKSIFAYIDHLFALVRPRKLLFMAIDGVAPRAKMNQQRSRRFR 121

Query: 2763 AAKDSAEAQAXXXXXXXXXXXXXXXXXXXXXXETSDSNVITPGTPFMAVLSVALQYYIHS 2584
            AAKD+A+A+A                      ET DSNVITPGT FMA LS ALQYYI S
Sbjct: 122  AAKDAAQAEAEEERLRKEFEAEGELLSVKEKPETFDSNVITPGTQFMAALSTALQYYIQS 181

Query: 2583 RLNHNLGWRFTKDTSSV*IYSWSHGAALGGYLKVILSDSNVPGEGEHKIMSYIRLQRNLP 2404
            RLNHNLGW+ TK                     VILSDSNVPGEGEHKIMSYIRLQRNL 
Sbjct: 182  RLNHNLGWQNTK---------------------VILSDSNVPGEGEHKIMSYIRLQRNLS 220

Query: 2403 GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVISLPGQQEKCFQCGQVGHLAAECHG 2224
            GFNPNTRHCLY LDADLIMLSLAT EVHFSILRE+++LPGQQ+KCF CGQ GHLAAEC G
Sbjct: 221  GFNPNTRHCLYSLDADLIMLSLATREVHFSILREIVTLPGQQDKCFLCGQAGHLAAECRG 280

Query: 2223 SSNGKA-----IDETPIHKKKYQFLNIWVLREYLQYDMKIPNCPIRLNFERLVDDFVFMC 2059
                 A     +D+TPIHKKKYQFLNIWVLREYLQYD+ I N P  ++FER+VDDFVF+C
Sbjct: 281  KQGDDALDWHVVDDTPIHKKKYQFLNIWVLREYLQYDLDILNPPFAIDFERIVDDFVFLC 340

Query: 2058 FFVGNDFLPHMPTLEIREGAINLLMHVYKREFAAMGGYLTDAGEVLLERVEHFIQSVAMN 1879
            FFVGNDFLPHMPTLEIREGAI+LLMH+Y+REF+AMGGYLT AGEV L++VEHFIQ VA+ 
Sbjct: 341  FFVGNDFLPHMPTLEIREGAISLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQCVAVY 400

Query: 1878 EDKIFQKRGRIQQAQENNEQMRMK--RENPGEVRVTVSDKVKLGEPGYKERYYMEKFNLS 1705
            E++IFQKR RIQQA +NNE+M++K  RE+   ++  V DKVKLGEPGYKERYY EKF LS
Sbjct: 401  EEQIFQKRTRIQQAFDNNEEMKLKARRESSEVIQAPVVDKVKLGEPGYKERYYAEKFELS 460

Query: 1704 NEDEIDEVKKDVVLKYVEGLCWVMRYYYQGVCSWHWFYPYHYAPFASDLKDLPELEITLF 1525
            N++EID+V+K+VVLKYVEGLCWV  YY+QGVCSW WFYP+HYAPFASDLKDL E+E+  F
Sbjct: 461  NQEEIDKVRKEVVLKYVEGLCWVCHYYFQGVCSWQWFYPFHYAPFASDLKDLGEVELNFF 520

Query: 1524 LGQPFKPFDQLMGTLPAASSNALPEHYRTLMTDPSSPIRDYYPEDFEVDMNGKRFAWQGV 1345
            +G+PFKPFDQLMGTLPAASSNALP+ YR LMT+PSSPI  ++P DFE+DMNGKRFAWQG+
Sbjct: 521  IGEPFKPFDQLMGTLPAASSNALPKEYRKLMTNPSSPIHRFFPSDFEIDMNGKRFAWQGI 580

Query: 1344 VKLPFIDERKXXXXXXXXXXXXXXXXXXRNSLMYDLLYVHMYHPLASYISQIYHQPPIFH 1165
             KLPFIDERK                  RN +M DLLY+H  HPLA  +   Y Q    H
Sbjct: 581  AKLPFIDERKLLAQTKKLESTLTEEEQIRNRVMLDLLYIHPVHPLAQLVISYYQQND--H 638

Query: 1164 TSPN-----AINTQASGGMNGYLWLCERNAYRSIYPSPIKGLGNIEKNSVINATYSNPPR 1000
             S        I+T+ASGGMNG LWL ERN  RS+ PSPI GL  +E N V+N T+ NP  
Sbjct: 639  LSEGERFAWEIDTRASGGMNGCLWLYERNVRRSVVPSPILGLPVLEGNQVLNITFLNPKN 698

Query: 999  HQHIPEPPVGVNMPQKIINPSDVKPSPVLWHEDNSSRRHQARDRPQVSGAISGPHLGEVS 820
              HIPE P GV MP+KI+ P D+KP P LWHEDN  RR Q R+RPQV  AI+GP LG+ +
Sbjct: 699  RGHIPEIPEGVVMPEKIVKPVDLKPFPTLWHEDN-GRRQQGRERPQVQRAIAGPFLGDAA 757

Query: 819  HRLLRNTLQMKPSTSALLDYPANWYH-VPNNHTVDRPRPAGPSGYERGYGQDQNYFHGNF 643
            HRL++NTL +KP+ S+   +    YH +P N+T  RPRPAGP+GY RGY  D NY +   
Sbjct: 758  HRLVKNTLNIKPNGSSSRVFDQQLYHNIPGNYTFYRPRPAGPAGYGRGYWDDPNYHYAQH 817

Query: 642  SNPRGTIVNSRSAPSYN--EMWKXXXXXXXXXXXXXXXYHLQTGKSSLTIKDG-PTYQHS 472
            SN +G + N R     N  +  +               ++L TG S+LT+++   +   +
Sbjct: 818  SNQQGLMSNPRYRSLSNGVQSNRHNFRTQDGVQYHQQYHNLSTGVSALTVEENIRSRAPA 877

Query: 471  VAPLRKPNTLFSPSPQQMPVQYVGQPPRPPTDWIDKPAYENPGMYAIHPEMYENTGMYVR 292
            V   R PN   +P+ Q    Q  G    PPT+WI+K A               NTGMY +
Sbjct: 878  VISPRMPNPGNTPNLQNQAEQNTGLLSSPPTNWINKTA-------------AGNTGMYFK 924

Query: 291  QPEVLSSNVYEKQVKMLYLARTEAPLET 208
            Q    S    EKQVK +Y  +T+   ET
Sbjct: 925  QKST-SIGPNEKQVKQVYQVKTQVAQET 951


>ref|NP_175851.1| 5'-3' exoribonuclease 4 [Arabidopsis thaliana]
            gi|75262833|sp|Q9FQ04.1|XRN4_ARATH RecName: Full=5'-3'
            exoribonuclease 4; AltName: Full=Protein ACC INSENSITIVE
            1; AltName: Full=Protein ETHYLENE INSENSITIVE 5; AltName:
            Full=Protein EXORIBONUCLEASE 4
            gi|11875626|gb|AAG40731.1|AF286718_1 XRN4 [Arabidopsis
            thaliana] gi|17381112|gb|AAL36368.1| putative exonuclease
            [Arabidopsis thaliana] gi|20259665|gb|AAM14350.1|
            putative exonuclease [Arabidopsis thaliana]
            gi|109627646|gb|ABG34298.1| At1g54490 [Arabidopsis
            thaliana] gi|332194988|gb|AEE33109.1| 5'-3'
            exoribonuclease 4 [Arabidopsis thaliana]
          Length = 947

 Score = 1041 bits (2693), Expect = 0.0
 Identities = 530/872 (60%), Positives = 626/872 (71%), Gaps = 21/872 (2%)
 Frame = -1

Query: 2943 PCFHPDGKPPPTTYDDVFKSMFDYIDHLFTMVRPRKLLYMAIDGVAPRAKMNQQRTRRFR 2764
            PCFHP+GKP P TYDDVFKSMF+YIDHLFT+VRPRK+LY+AIDGVAPRAKMNQQR+RRFR
Sbjct: 62   PCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFR 121

Query: 2763 AAKDSAEAQAXXXXXXXXXXXXXXXXXXXXXXETSDSNVITPGTPFMAVLSVALQYYIHS 2584
            AAKD+AEA+A                      ET DSNVITPGTPFMA+LSVALQYYI S
Sbjct: 122  AAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQS 181

Query: 2583 RLNHNLGWRFTKDTSSV*IYSWSHGAALGGYLKVILSDSNVPGEGEHKIMSYIRLQRNLP 2404
            RLNHN GWR                     Y+KVILSDSNVPGEGEHKIMSYIRLQRNLP
Sbjct: 182  RLNHNPGWR---------------------YVKVILSDSNVPGEGEHKIMSYIRLQRNLP 220

Query: 2403 GFNPNTRHCLYGLDADLIMLSLATHEVHFSILREVISLPGQQEKCFQCGQVGHLAAECHG 2224
            GF+PNTRHCLYGLDADLIMLSLATHEVHFSILREVI+ PGQQEKCF CGQ GH A++C G
Sbjct: 221  GFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPG 280

Query: 2223 SS-NGKAIDETPIHKKKYQFLNIWVLREYLQYDMKIPNCPIRLNFERLVDDFVFMCFFVG 2047
             S +  A  + PIHKKKYQFLNIWVLREYLQY++ IP+ P  +NFER++DDFVF+CFFVG
Sbjct: 281  KSGSNNAAADIPIHKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVG 340

Query: 2046 NDFLPHMPTLEIREGAINLLMHVYKREFAAMGGYLTDAGEVLLERVEHFIQSVAMNEDKI 1867
            NDFLPHMPTLEIREGAINLLMHVY++EF AMGGYLTD+GEVLL+RVEHFIQ+VA+NEDKI
Sbjct: 341  NDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKI 400

Query: 1866 FQKRGRIQQAQENNEQMRMK-RENPGEVRVT-VSDKVKLGEPGYKERYYMEKFNLSNEDE 1693
            FQKR RI+Q+ +NNE+M+ + R +P EV    + DK+KLGEPGYKERYY EKF+ +N +E
Sbjct: 401  FQKRTRIKQSMDNNEEMKQRSRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEE 460

Query: 1692 IDEVKKDVVLKYVEGLCWVMRYYYQGVCSWHWFYPYHYAPFASDLKDLPELEITLFLGQP 1513
             +++K+D+VLKYVEGLCWV RYYYQGVCSW WFYPYHYAPFASDLK+LP+LEIT F+G+P
Sbjct: 461  TEQIKQDMVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEP 520

Query: 1512 FKPFDQLMGTLPAASSNALPEHYRTLMTDPSSPIRDYYPEDFEVDMNGKRFAWQGVVKLP 1333
            FKPFDQLMGTLPAASSNALP  YR LMTDPSSPI  +YP DFE+DMNGKRFAWQG+ KLP
Sbjct: 521  FKPFDQLMGTLPAASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLP 580

Query: 1332 FIDERKXXXXXXXXXXXXXXXXXXRNSLMYDLLYVHMYHPLASYISQIYH---QPPIFHT 1162
            FI+E+                   RNS+M DLLYVH  HPL   I Q YH     P    
Sbjct: 581  FIEEKLLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHEC 640

Query: 1161 SPNAINTQASGGMNGYLWLCERNAYRSIYPSPIKGLGNIEKNSVINATYSNPPRHQHIPE 982
             P  I+  +S GMNG+LW  ERN +++   SP+ GL  IE+N  +N TY  P +H HI E
Sbjct: 641  LPWMIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISE 700

Query: 981  PPVGVNMPQKIINPSDVKPSPVLWHEDNSSRRHQARDRPQVSGAISGPHLGEVSHRLLRN 802
            PP G  +P KI+   D+KP P LWHEDNS+RR QARDRPQV GAI+GP LGE +HRL++N
Sbjct: 701  PPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKN 760

Query: 801  TLQMKPST---SALLDYPANWYHVPNNHT---VDRPRPAGPSGYERGYGQDQNYFHGNFS 640
            TL MK ST   S L+D    + +VP N++   V+RPR  GPS Y + Y  D +Y++G ++
Sbjct: 761  TLNMKSSTGAASGLIDPNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYN 820

Query: 639  N-PRGTIVN-------SRSAPSYNEMWKXXXXXXXXXXXXXXXYHLQTGKSSLTIKD-GP 487
            N  +GT  N       S  +  YN  +                  L  G S L+I+D G 
Sbjct: 821  NSTQGTFNNGPRYPYPSNGSQDYNRNYNSKIVAEQHNRGG-----LGAGMSGLSIEDNGR 875

Query: 486  TYQHSVAPLRKPNTLFSPSPQQMPVQYVGQPP 391
            + Q   +     N   +P P   P Q++G  P
Sbjct: 876  SKQLYSSYTEAANANLNPLPSP-PTQWIGTQP 906