BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018425
         (860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   362   6e-98
emb|CBI17575.3| unnamed protein product [Vitis vinifera]              353   2e-95
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   340   2e-91
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   332   5e-89
ref|XP_002525094.1| pentatricopeptide repeat-containing protein,...   327   2e-87

>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Vitis vinifera]
          Length = 519

 Score =  362 bits (929), Expect = 6e-98
 Identities = 172/289 (59%), Positives = 223/289 (77%), Gaps = 6/289 (2%)
 Frame = +2

Query: 2   FFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWL 181
           FFNWA RL+GFKHDQ+TYTTMLDIFGEA RI SM  VFQQMQEKGI  DAVTYT+L+HW 
Sbjct: 52  FFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWF 111

Query: 182 SKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNC 361
           S  GD+E ++ +W+EMK K C  TVV+YTA MK+LFDN R K+A +VYKEML+SGC+PNC
Sbjct: 112 SNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNC 171

Query: 362 YTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKY 541
           YTYTVLME+L  +G++K ALEI S+MQEAGVQPDKATCNIL++KF + G+ WA+  IL Y
Sbjct: 172 YTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLY 231

Query: 542 MKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSL------EGTDVEEVTADFHST 703
           MK++ LVLR+PVY++ALQ LKVAGES+ LL++ N HL++      E  + +E  AD HST
Sbjct: 232 MKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHST 291

Query: 704 VDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIVQSSCVNNR 850
           +D   +   L K+NF A++ ++ GMI  N ++ S +IS I++ +C + R
Sbjct: 292 IDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCR 340


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  353 bits (907), Expect = 2e-95
 Identities = 172/300 (57%), Positives = 223/300 (74%), Gaps = 17/300 (5%)
 Frame = +2

Query: 2    FFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWL 181
            FFNWA RL+GFKHDQ+TYTTMLDIFGEA RI SM  VFQQMQEKGI  DAVTYT+L+HW 
Sbjct: 178  FFNWASRLKGFKHDQFTYTTMLDIFGEARRIESMNYVFQQMQEKGIKTDAVTYTSLMHWF 237

Query: 182  SKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNC 361
            S  GD+E ++ +W+EMK K C  TVV+YTA MK+LFDN R K+A +VYKEML+SGC+PNC
Sbjct: 238  SNDGDIERAVRVWKEMKAKGCCLTVVSYTAYMKILFDNKRVKEAADVYKEMLQSGCAPNC 297

Query: 362  YTYTVLMEYLISTG-----------RFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAG 508
            YTYTVLME+L  +G           ++K ALEI S+MQEAGVQPDKATCNIL++KF + G
Sbjct: 298  YTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFSRMQEAGVQPDKATCNILIEKFCKTG 357

Query: 509  EIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSL------EGTD 670
            + WA+  IL YMK++ LVLR+PVY++ALQ LKVAGES+ LL++ N HL++      E  +
Sbjct: 358  QTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNPHLNVGLSSKEEIVE 417

Query: 671  VEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIVQSSCVNNR 850
             +E  AD HST+D   +   L K+NF A++ ++ GMI  N ++ S +IS I++ +C + R
Sbjct: 418  FKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSVIISQIIEVNCAHCR 477


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  340 bits (873), Expect = 2e-91
 Identities = 166/291 (57%), Positives = 222/291 (76%), Gaps = 7/291 (2%)
 Frame = +2

Query: 2    FFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWL 181
            FFNWA RL+GFKHDQ+TYTTMLDIFGEAGRISSMK VF QM EKGI +D+VTYT+++HWL
Sbjct: 219  FFNWASRLKGFKHDQFTYTTMLDIFGEAGRISSMKHVFNQMHEKGIKIDSVTYTSMMHWL 278

Query: 182  SKSGDLEGSLEMWEEMKVKECS-PTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPN 358
            S SG+++ ++ +W+EMK K C  PTVV+YTA +K+LFDN+R K+AT +YKEML +GC PN
Sbjct: 279  STSGNVDEAIALWDEMKSKGCCYPTVVSYTAFIKILFDNHRVKEATAIYKEMLHNGCVPN 338

Query: 359  CYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILK 538
            CYTYTVLM++LI++G+ KEALEI  KMQEAGV+PDKA CNIL+ K S+      +  IL+
Sbjct: 339  CYTYTVLMDHLIASGKCKEALEIFQKMQEAGVEPDKAACNILIDKCSKVCGTVFMTKILQ 398

Query: 539  YMKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSLEGT------DVEEVTADFHS 700
            YMKE++LVLR+ VYV+A++ALK+AGES+ LL++ N H  L+ +      D   V AD  S
Sbjct: 399  YMKENRLVLRYRVYVKAMEALKIAGESDTLLRQVNPHFYLDSSFKEKAHDRNTVIADSSS 458

Query: 701  TVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIVQSSCVNNRP 853
             +D  ++  LL  RN +A++H+I GM+   I V +K+IS I++ +C   RP
Sbjct: 459  NIDKELLLVLLRNRNVVAIDHLIQGMMDKKISVDNKVISTIIEVNCNCCRP 509


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g01390-like [Glycine max]
          Length = 585

 Score =  332 bits (852), Expect = 5e-89
 Identities = 156/290 (53%), Positives = 218/290 (75%), Gaps = 6/290 (2%)
 Frame = +2

Query: 2   FFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWL 181
           FFNW   LRGFKHD YTYTTMLDIFGEAGR+SSMK +FQQMQEKGI +D+VTYT+++HWL
Sbjct: 116 FFNWVSSLRGFKHDHYTYTTMLDIFGEAGRVSSMKHLFQQMQEKGIKLDSVTYTSMMHWL 175

Query: 182 SKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNC 361
           S SG+ + +++MW++MK K   PTVV+YTA +K+LF N R K+AT  YKEM+ S  +PNC
Sbjct: 176 SSSGNFDEAMQMWDQMKSKGFHPTVVSYTAYIKILFHNQRVKEATRAYKEMISSRVAPNC 235

Query: 362 YTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKY 541
           +TYTVLM+YLI +G++KEALEI  KMQEAG QPDKA CNIL+++ S+ G    + HIL+Y
Sbjct: 236 HTYTVLMDYLIGSGQYKEALEIFEKMQEAGAQPDKAACNILIERCSKVGGTEFMTHILQY 295

Query: 542 MKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSLE------GTDVEEVTADFHST 703
           MKE++LVLR+PV+V+AL+ALK+AGES+ LL++ N    ++       ++   V AD  + 
Sbjct: 296 MKENRLVLRYPVFVKALEALKIAGESDTLLRQVNPQFYMDCIIRKKASNTITVAADCPTN 355

Query: 704 VDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIVQSSCVNNRP 853
           +D  ++  LL  RN +A++H++ GM+   I +  K++S I++ +C + RP
Sbjct: 356 IDKELLFVLLKNRNVVAIDHLLTGMMDKKISLDHKVVSTIIEVNCSHCRP 405


>ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535553|gb|EEF37221.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  327 bits (839), Expect = 2e-87
 Identities = 154/288 (53%), Positives = 216/288 (75%), Gaps = 4/288 (1%)
 Frame = +2

Query: 2   FFNWALRLRGFKHDQYTYTTMLDIFGEAGRISSMKLVFQQMQEKGIIVDAVTYTALLHWL 181
           FFNW    +GFKHDQ+TYTTMLDIFGEAGRI SM  VF+QMQEK I +D VTYT+L+HWL
Sbjct: 7   FFNWVSGFQGFKHDQFTYTTMLDIFGEAGRIESMNYVFKQMQEKDIKIDTVTYTSLMHWL 66

Query: 182 SKSGDLEGSLEMWEEMKVKECSPTVVTYTAVMKVLFDNNRAKDATEVYKEMLESGCSPNC 361
           S++GD++G++++WEEMK K    TVV+YTA MK+LFDN R K+AT +YKEMLE G  PNC
Sbjct: 67  SRNGDVDGAIKIWEEMKEKGLYLTVVSYTAFMKILFDNKRVKEATNIYKEMLECGIPPNC 126

Query: 362 YTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKY 541
           +TYTVLMEYL+ +G+ +EALEI  KMQEAGVQPDKA CNILV++   AGE   +  IL+Y
Sbjct: 127 HTYTVLMEYLVVSGKCQEALEIFKKMQEAGVQPDKAMCNILVERCCEAGETNTMTPILQY 186

Query: 542 MKEHKLVLRHPVYVQALQALKVAGESNELLKEANRHLSLEGTDVEE----VTADFHSTVD 709
           MKE+ L LR+P++++AL+ L++AGE + LLK+ N H + E  + ++     T+ ++  +D
Sbjct: 187 MKENHLALRYPIFLEALKILRIAGECDALLKQVNPHCAAESINNDDSSEFTTSAYNDPID 246

Query: 710 TAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLISAIVQSSCVNNRP 853
             ++  LL K+N +AV+H++ G++  N+ + S ++S I++ +C   RP
Sbjct: 247 KGLLLILLRKQNLVAVDHLLAGVLDKNMVLESWIVSTIIEVNCSQCRP 294