BLASTX nr result
ID: Coptis24_contig00018299
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018299
(1633 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176805.1| FBD-associated F-box protein [Arabidopsis thali... 121 6e-25
ref|XP_003635004.1| PREDICTED: putative F-box/LRR-repeat protein... 111 6e-22
ref|NP_175674.2| F-box/LRR-repeat protein [Arabidopsis thaliana]... 110 8e-22
emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera] 110 8e-22
ref|XP_003588811.1| F-box/FBD/LRR-repeat protein [Medicago trunc... 110 1e-21
>ref|NP_176805.1| FBD-associated F-box protein [Arabidopsis thaliana]
gi|75333542|sp|Q9C8Y6.1|FBD5_ARATH RecName:
Full=FBD-associated F-box protein At1g66310
gi|12324396|gb|AAG52163.1|AC020665_8 unknown protein;
26122-24618 [Arabidopsis thaliana]
gi|67633490|gb|AAY78669.1| F-box family protein
[Arabidopsis thaliana] gi|332196372|gb|AEE34493.1|
FBD-associated F-box protein [Arabidopsis thaliana]
Length = 442
Score = 121 bits (303), Expect = 6e-25
Identities = 120/460 (26%), Positives = 203/460 (44%), Gaps = 14/460 (3%)
Frame = +3
Query: 21 RMKLSSTKEGMDRLSFLPDGIREHILSFLPMEEAVKTGILSSQWRDISGSLSNLEFDQRR 200
R++ + + +D L LP+ + HIL LP ++ VKT +LSS+WR++ + L+ D
Sbjct: 8 RVRAKQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSSD 67
Query: 201 FEEAEGKNRKAIDFQDSVDCFLINYDRPQIRSFSLKLF-HYDNPRITD-IHTNAWISFAV 374
F E N + F +D F+ + ++ F L+ F + + +++ H WI+ V
Sbjct: 68 FTE----NNTFVSF---IDRFMSFHSDLYLKKFKLRFFCNLNGDEVSENAHIARWINDVV 120
Query: 375 KHNVQELHLA-RIPQLPGRIFTCHTLTVLSLEAVEFHVRSMVSFPNLKRLVLSWCKLHGD 551
K V L L ++P ++ C++L L L V + S P +K +VL W K D
Sbjct: 121 KRKVHNLDLTWGAVEIPPILYLCNSLVSLKLCGVTLPNLELTSLPCVKVIVLEWVKFAND 180
Query: 552 NFTGNIFSCCPVLEHLILSGNSWYDFNAVIISPQNLKVFEYWKMSIGTFTDIYICTPNLQ 731
+ S C VLE L L + + +S Q+L F Y S D + N
Sbjct: 181 LALEMLISGCLVLESLTLCRRPNDNVKILRVSSQSLLRFSYNGSSYKGLHDDLVLEINAP 240
Query: 732 KITYLGMELPNISL----ETLSSLVSACFTI------FAKHCPDKN-LAEILMGLHNVAT 878
K+ L + ++ T SS+V A I K P +N + L G+ +V
Sbjct: 241 KLKILKLFSHQLTTSFIRNTSSSIVEADINIGLGKKFDPKDLPKRNVICNFLAGISSVKN 300
Query: 879 LRLYGSCLKVLSWDPDLAASLTSCCSLRRLQLVTDPFKDSVKVLILLLRTYPNLETLEIC 1058
L + L+V+ +D L C+L L + D + +S ++L + L + PNL++L +
Sbjct: 301 LFIAPCTLEVI-YDYSRCEPLPLFCNLSYLSV--DFYNNSWEILPIFLESCPNLKSLVVG 357
Query: 1059 FVSEDLESVLELSKELFDTYLSKHLTGHLMKHIKTIEIEDFQVAAEDELHIVKYLLENAT 1238
++ LS L+ ++ +EIE E+ +V YLLEN+
Sbjct: 358 SITSPKRRTSVLSG-----------PRRLLSSLEYVEIESPLTGEVFEMKLVSYLLENSP 406
Query: 1239 SLKEMKIKYHDKAQKDLKFRMLVAESLLTITKASPHAVIV 1358
LK++ I D ++K + LLTI + S +V
Sbjct: 407 ILKKLTINLDDSSRKKAEC------ELLTIPRRSTSCQVV 440
>ref|XP_003635004.1| PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis
vinifera]
Length = 610
Score = 111 bits (277), Expect = 6e-22
Identities = 138/489 (28%), Positives = 230/489 (47%), Gaps = 47/489 (9%)
Frame = +3
Query: 27 KLSSTKEGMDRLSFLPDGIREHILSFLPMEEAVKTGILSSQWRDISGSLSNLEFDQRRFE 206
++SS K+G+ LS D I ILSFLPM+ V T ILS +W+ + + NL F RR +
Sbjct: 68 EISSRKDGISELS---DSILIRILSFLPMKYVVATSILSKRWQFLWTMVPNLVFRFRRRD 124
Query: 207 EAEGKNRKAIDFQDSVDCFLINYDRPQIRSFSLKLFHYDNPRITDIHTNAWISFAVKHNV 386
E F +S+D L+ + QI+ F + F Y + + + N WI A + NV
Sbjct: 125 E---------HFVNSIDKTLVLHQNSQIKKFLID-FTYQSQFQSSV--NVWIRHATRKNV 172
Query: 387 QELHLA-RIPQ------------LPGRIFTCHTLTVLSLEAVEFHVRSMVSFPNLKRLVL 527
+ELHL R+ Q LP ++ ++ LSL ++S+P+LK L +
Sbjct: 173 EELHLQFRVGQHIRSSPMDYAHALPQFLYANSSIVKLSLWFCNIKPTWVISWPSLKTLSI 232
Query: 528 SWCKLHGDNFTGNIFSCCPVLEHLILSGNSWYDFNAVIISPQNLK---VFEYWKMSIGTF 698
+L D+ I S CP LE L L + + N++ I+ +LK + YW S
Sbjct: 233 GSVEL-CDDLIEEILSGCPALESLEL--HHCFGINSLNITSASLKKLVINRYWDSSHSHH 289
Query: 699 TDIY-ICTPNLQKITYLG-MELPNISLETLSSLVSAC--FTIFAKHCPDKN--------L 842
+ I PN+Q + LG M ++ + SL A F + + K+ +
Sbjct: 290 RSVLKISAPNVQSLGILGNMYTKECRVKNVPSLFDASLNFELAMQEGNPKDHYKLYHKVV 349
Query: 843 AEILMGLHNVATLRLYGSCLKVLS--WDPDLAASLTSCCSLRRLQLVTDPFKDSVKVLIL 1016
++L +++V L + C++VLS DL++ L+ +L+ L L T K + +
Sbjct: 350 MKLLKSVNHVKALTVGTWCIQVLSIFEGKDLSSLLS---NLKCLILDTHLNKWDLPGIAN 406
Query: 1017 LLRTYPNLETLEICFVSEDLESVLELSKELFDTYLSKH--------------LTGHL--M 1148
LL++ +LET I +S + ++S E+ ++ H L L +
Sbjct: 407 LLQSSTHLETFVINMISPCSQ---QISVEVGFSFTDLHNFDEEKYWSSREGVLANSLINL 463
Query: 1149 KHIKTIEIEDFQVAAEDELHIVKYLLENATSLKEMKIKYHDKAQKDLKFRML-VAESLLT 1325
K +K I + Q E +VK+LL+NA L++++I +Q ++ L A+SLL+
Sbjct: 464 KTVKIIGVIWNQPGIELVFGLVKFLLKNARMLEKVEICAKRDSQSRSRWSSLNSAQSLLS 523
Query: 1326 ITKASPHAV 1352
+ASP+AV
Sbjct: 524 FPRASPNAV 532
>ref|NP_175674.2| F-box/LRR-repeat protein [Arabidopsis thaliana]
gi|51969366|dbj|BAD43375.1| F6D8.13 [Arabidopsis
thaliana] gi|332194713|gb|AEE32834.1| F-box/LRR-repeat
protein [Arabidopsis thaliana]
Length = 507
Score = 110 bits (276), Expect = 8e-22
Identities = 128/452 (28%), Positives = 198/452 (43%), Gaps = 36/452 (7%)
Frame = +3
Query: 45 EGMDRLSFLPDGIREHILSFLPMEEAVKTGILSSQWRDISGSLSNLEFDQRRF-EEAEGK 221
E MD +S LP+G+ +I SFL +EA T IL +WR++ + NL D F EGK
Sbjct: 41 EKMDHVSSLPEGVLCNIFSFLTTKEAALTSILCKRWRNLLAFVPNLVIDDSVFLHPEEGK 100
Query: 222 NRK---AIDFQDSVDCFLINYDRPQIRSFSLKLFHYDNPRITDIHTNAWISFAVKHNVQE 392
+ F + VD L I+ FSLK F D NAWIS + V E
Sbjct: 101 EERYEIQQSFMEFVDRVLALQGNSPIKKFSLK-FRTD---FASHRVNAWISNVLARGVSE 156
Query: 393 LHL------ARIPQLPGRIFTCHTLTVLSLEAVEFH-VRSMVSFPNLKRLVLSWCKLHGD 551
L + A L + F L L + ++ + + P LK LVL KL D
Sbjct: 157 LDVLVILYGAEFLPLSPKCFKSRNLVTLKINSLGIDWLAGDIFLPMLKTLVLHSVKLCVD 216
Query: 552 NFTGNIFSCCPVLEHLILSGNSWYDFNAVIISPQNLKV----FEYWKMSIGTFTDIYICT 719
F F P LE L+L SW D V +S ++K F Y+ +GT + + T
Sbjct: 217 KF---FFRALPALEELVLFAVSWRD-RDVTVSNASIKTLTIKFNYY---LGTLS---LDT 266
Query: 720 PNLQKITY---LGMELPNISLETLS----SLVSACFTIFAKHCPD------------KNL 842
P+L + + + P +E LS SL+ + I P+ N+
Sbjct: 267 PSLVSFCFSDHVAKDYPLAKMEKLSEARISLLVTEYQIERARAPNIYWVEDDVVLRLVNV 326
Query: 843 AEILMGLHNVATLRLYGSCLKVLSWDPDLAASLTSCCSLRRLQLVTDPFKDSVKVLILLL 1022
+++ G+ NV L L + L+VLS S+ +L+ L + ++ + + + +LL
Sbjct: 327 GKLMKGIRNVQYLNLSPNTLEVLS---KCCESMPLFNNLKSLTIESNE-RRGWQAMPVLL 382
Query: 1023 RTYPNLETLEICFVSEDLESVLELSKELFDTYLSKHLTGHLMK--HIKTIEIEDFQVAAE 1196
R P+LETL + L V E + D +S+ G + +K +EI+ FQ
Sbjct: 383 RNCPHLETL---VLEGLLHHVTEKCRNACDC-VSQEEKGRSLTSCQVKVLEIKGFQ-GTT 437
Query: 1197 DELHIVKYLLENATSLKEMKIKYHDKAQKDLK 1292
E+H +K+ LE+ L+E+KI + L+
Sbjct: 438 KEMHTIKHFLEHFPCLREIKIHMEENGPTQLR 469
>emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]
Length = 607
Score = 110 bits (276), Expect = 8e-22
Identities = 135/488 (27%), Positives = 211/488 (43%), Gaps = 44/488 (9%)
Frame = +3
Query: 33 SSTKEGMDRLSFLPDGIREHILSFLPMEEAVKTGILSSQWRDISGSLSNLEFDQRRF--- 203
S +E D +S LPD + HILSFLP + AV T ILS +WR + S+ L+FD +
Sbjct: 3 SEYEESRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNP 62
Query: 204 EEAEGKNRKAIDFQDSVDCFLINYDRPQIRSFSLKLFHYDNPRITDIHTNAWISFAVKHN 383
+ I FQ+ VD L + + I+ F L Y + + ++ +WI A++
Sbjct: 63 STLVELEERIIMFQNFVDGVLRHSEVSCIKKFRL---GYRDNNLDSVY--SWICIALERR 117
Query: 384 VQELHLARI----PQLPGRIFTCHTLTVLSLEAVEF-HVRSMVSFPNLKRLVLSWCKLHG 548
VQEL L + +LP F C TL V+ L F + + V P+LK L L +
Sbjct: 118 VQELDLHLLIDWRVELPPMFFICKTLVVVKLSCALFLDIPTTVWLPSLKALHLKSVEYSD 177
Query: 549 DNFTGNIFSCCPVLEHLILSGNSWYDFNAVIISPQNLKVFEYWKMSIGTFTD-------- 704
D+ + S CPVLE L++ + V +S +LK+ + I FTD
Sbjct: 178 DDSIQKLLSGCPVLEELVIEREERDNQWVVNVSNPSLKI-----LRIFFFTDGFAHPYEQ 232
Query: 705 ------IYICTPNLQKITYLGMELPNISLETLSSLVSACFTIFAKHCPDKNLAEILMGLH 866
+ + PNL+ ++ + ++ L SLV A + +++ E H
Sbjct: 233 EDQDYKVVVDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDV------EQDSEEFEESPH 286
Query: 867 NVATLRLYGSCLKVLSWDPDLAASLTSCCSLRRLQLVTDPFKDSVKVLI--LLLRTYPNL 1040
N + +G ++L S C SL + L DS+ I L T+ N+
Sbjct: 287 N-GGISYHGPIYELLG-----RISNVKCLSLTGVTL------DSLSGTIGDYKLPTFHNM 334
Query: 1041 ETLEICFVS----EDLESVLELSKELFDTYLSKHLTGHLMK---------------HIKT 1163
LE F+ + L + L S L + T L+ H+K
Sbjct: 335 TRLEFLFIGGFNWDFLPNFLHSSPNLEALVIETGYTNELIPEGWLMPLQVPACLVLHLKE 394
Query: 1164 IEIEDFQVAAED-ELHIVKYLLENATSLKEMKIKYHDKAQKDLKFRMLVAESLLTITKAS 1340
IEI ++ ED EL V+YLL+NA L++M I H+ + D +F V + LL + + S
Sbjct: 395 IEIR--RIVGEDYELEAVEYLLKNAEVLQQMTIDCHE-SYMDQEF--CVCKKLLGLPRGS 449
Query: 1341 PHAVIVFS 1364
+V S
Sbjct: 450 RSCFVVSS 457
>ref|XP_003588811.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
gi|355477859|gb|AES59062.1| F-box/FBD/LRR-repeat protein
[Medicago truncatula]
Length = 449
Score = 110 bits (275), Expect = 1e-21
Identities = 117/447 (26%), Positives = 198/447 (44%), Gaps = 10/447 (2%)
Frame = +3
Query: 51 MDRLSFLPDGIREHILSFLPMEEAVKTGILSSQWRDISGSLSNLEFDQRRFEEAEGKNRK 230
+DR+S LP + + ILS +P++EAV+T +LSS WR+ +L NL F++ A K
Sbjct: 18 LDRISCLPGHVIDQILSLMPIKEAVRTSVLSSSWRNKWYTLPNLVFNKHCISVAASKYTS 77
Query: 231 AID--FQDSVDCFLINYDRPQIRSFSLKLFHYDNPRITDI-HTNAWISFAVKHNVQEL-- 395
I+ F VD L+ + P I F L R+ D+ + W+ + +++EL
Sbjct: 78 VINNKFLRIVDHVLLQHSGP-INKFMLSDNENCLIRVCDVSDVHRWVLHLSRRSIKELLL 136
Query: 396 --HLARIPQLPGRIFTCHTLTVLSLEAVEFHV-RSMVSFPNLKRLVLSWCKLHGDNFTGN 566
L + ++P +F+C +L LSL + + + F NL+ L L L D+F N
Sbjct: 137 HFWLDKRYKIPLSLFSCQSLRHLSLSCCQLKLPTTFEGFKNLQYLHLEEVTLAQDDFE-N 195
Query: 567 IFSCCPVLEHLILSGNSWYDFNAVIISPQNLKVFEYWKMSIGTFTDIYICTPNLQKITYL 746
+ S CP+L+HL+L F+ + + NL F+++ G F DI + Y+
Sbjct: 196 MISGCPLLDHLVLMKID--GFSQINVHAPNLSTFQFY----GKFEDISFQNSSQIYTVYV 249
Query: 747 GMELPNISLETLSSLVSACFTIFAKHCPDKNLAEILMGLHNVATLRLYGSCLKVLSWDPD 926
+ + S S L H NL + ++ L + LK L+ D
Sbjct: 250 DLSIYLNSKSNQSKL----------HGCSSNLLKFFAHQPHIQFLEIGYYFLKYLAADDV 299
Query: 927 LAASLTSCCSLRRLQLVTDPFKD--SVKVLILLLRTYPNLETLEICFVSEDLESVLELSK 1100
C SL L L + F D + + LLR+ PNL+ LEI E+ +L +
Sbjct: 300 PVKLPAPCISLCELSLCIN-FNDLKEISAALCLLRSSPNLKKLEIFARIEEETVLLTPTS 358
Query: 1101 ELFDTYLSKHLTGHLMKHIKTIEIEDFQVAAEDELHIVKYLLENATSLKEMKIKYHDKAQ 1280
++ S ++H+ I + EL +++LL + L++M +K+ Q
Sbjct: 359 YCWEDIFSGPAMPIQVQHVTIDGISGIR----SELDFIRFLLRYSPVLEKMIVKHVVNVQ 414
Query: 1281 KDLKFRMLVAESLLTITKASPHAVIVF 1361
+L LL +AS A +++
Sbjct: 415 PEL------ITELLRFKRASDEAEVIY 435