BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018297
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    56   3e-09
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    53   7e-09
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    64   1e-08
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    55   2e-08
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    60   3e-07

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 56.2 bits (134), Expect(2) = 3e-09
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
 Frame = -1

Query: 380 VGIGYPNVHIVDPVGKSGGLSTVFQRQCGSGDI----RLV-INTITDKSKNFLHHGDWFI 216
           V +G+  +  V+P+G SGGL+  + R      I    RL+ I TI D ++ F       I
Sbjct: 49  VSLGFDCLKTVEPIGNSGGLALFYSRDYPVKFIYVCDRLIDIETIIDGNRVF-------I 101

Query: 215 SFIDGHPVPSKRKVVRDHIRTVGSAIAQPWLLWGAFNAILKYYEKYGG 72
           +F+ G PV   R++V   +  +G   ++PW + G FN I+  +EK GG
Sbjct: 102 TFVYGDPVVQYRELVWKRLTRIGIVRSEPWFMIGDFNEIIGNHEKRGG 149



 Score = 30.4 bits (67), Expect(2) = 3e-09
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -3

Query: 522 MLSGNCRGTGTSTV*N-LMGLFREHNPDMIFLSETNAIMVKMEKIK 388
           ++S NC+G G  T    L  + R ++P  +FLSET   +V ++ ++
Sbjct: 3   LISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQ 48


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score = 53.1 bits (126), Expect(2) = 7e-09
 Identities = 33/101 (32%), Positives = 54/101 (53%)
 Frame = -1

Query: 374 IGYPNVHIVDPVGKSGGLSTVFQRQCGSGDIRLVINTITDKSKNFLHHGDWFISFIDGHP 195
           +GY  V  V+P+G SGGL+ +F ++     I+     + D    F  H ++++S + G+P
Sbjct: 53  LGYERVFTVNPIGLSGGLA-LFWKKGVDIVIKYADKNLIDFQIQFGSH-EFYVSCVYGNP 110

Query: 194 VPSKRKVVRDHIRTVGSAIAQPWLLWGAFNAILKYYEKYGG 72
             S + +V + I  +G    +PW + G FN IL   EK GG
Sbjct: 111 AFSDKHLVWEKITRIGINRKEPWCMLGDFNPILHNGEKRGG 151



 Score = 32.0 bits (71), Expect(2) = 7e-09
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 522 MLSGNCRGTGTS---TV*NLMGLFREHNPDMIFLSETNAIMVKMEKIKRWCRY 373
           ++S NC+G G S   T+  LM +   H P+++FL ET      +  ++ W  Y
Sbjct: 3   LVSWNCQGLGWSQDLTIPRLMEMRLSHFPEVLFLMETKNCSNVVVDLQEWLGY 55


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 4/108 (3%)
 Frame = -1

Query: 383 GVGIGYPNVHIVDPVGKSGGLSTVFQR----QCGSGDIRLVINTITDKSKNFLHHGDWFI 216
           GV +G+ ++ I+ P G SGGL   +++    Q  S D+RLV   +  K+ NF      ++
Sbjct: 410 GVKMGFEDMCIISPRGLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNF------YL 463

Query: 215 SFIDGHPVPSKRKVVRDHIRTVGSAIAQPWLLWGAFNAILKYYEKYGG 72
           S I GHP+PS+R  + + ++ V +  + PW++ G FN IL   EK GG
Sbjct: 464 SCIYGHPIPSERHHLWEKLQRVSAHRSGPWMMCGDFNEILNLNEKKGG 511


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 55.1 bits (131), Expect(2) = 2e-08
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
 Frame = -1

Query: 374 IGYPNVHIVDPVGKSGGLSTVFQRQCGS----GDIRLVINTITDKSKNFLHHGDWFISFI 207
           +GY  +H V+P G+SGGL+  ++          D  L+   ++ ++K       WFIS +
Sbjct: 50  LGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLMDLQVSSRNKV------WFISCV 103

Query: 206 DGHPVPSKRKVVRDHIRTVGSAIAQPWLLWGAFNAILKYYEKYGG 72
            G PV   R  + +H+ ++G   A+ W L G FN I    EK GG
Sbjct: 104 YGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLGG 148



 Score = 28.9 bits (63), Expect(2) = 2e-08
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 522 MLSGNCRGTGTS-TV*NLMGLFREHNPDMIFLSETNAIMVKMEKIKRWCRY 373
           ++S NC+G     T+  L  + ++H PD++FL ET      + K+  W  Y
Sbjct: 2   VISWNCQGLRNPWTIRYLKEMKKDHFPDILFLMETKNSQDFVYKVFCWLGY 52


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1138

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 36/101 (35%), Positives = 56/101 (55%)
 Frame = -1

Query: 374 IGYPNVHIVDPVGKSGGLSTVFQRQCGSGDIRLVINTITDKSKNFLHHGDWFISFIDGHP 195
           +GY  V+ V+PVG SGGL+ +F ++  + D+R     + D    F  + D+F+S + G P
Sbjct: 17  LGYDRVYTVNPVGLSGGLA-LFWKKGVNIDVRYADKNLIDFQIQFGSY-DFFVSCVYGDP 74

Query: 194 VPSKRKVVRDHIRTVGSAIAQPWLLWGAFNAILKYYEKYGG 72
             S + +V + I  +G    +PW + G FN IL   EK GG
Sbjct: 75  AFSNKHLVWEKISKIGLNRKEPWCMLGDFNVILHNGEKRGG 115