BLASTX nr result
ID: Coptis24_contig00018271
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018271
(728 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2... 116 6e-28
ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 109 8e-26
ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putativ... 109 2e-24
ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 105 6e-24
ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 103 2e-23
>ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1|
predicted protein [Populus trichocarpa]
Length = 594
Score = 116 bits (290), Expect(2) = 6e-28
Identities = 65/117 (55%), Positives = 81/117 (69%)
Frame = +2
Query: 239 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 418
+GKEIEEIL LGSR+ G V N S S Q QNLLLSAT N+K++HLAKISLENPVM
Sbjct: 189 FGKEIEEILDLLGSRQIGSVGNGNQVSSLSNFQGQNLLLSATLNEKVNHLAKISLENPVM 248
Query: 419 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 589
IG+D+ K+ + +S H+++ SD DDG + K+ N S DY LP QL+QRYVK
Sbjct: 249 IGLDDKKIQPD---QSVDHIETAESDEDDGLGY-SKVKNSSTGDYKLPAQLVQRYVK 301
Score = 34.3 bits (77), Expect(2) = 6e-28
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 660 FLSVSCGSRLVILLSILRNLNER 728
++ V CGSRL +LLSIL+NL ER
Sbjct: 299 YVKVPCGSRLAVLLSILKNLFER 321
Score = 73.9 bits (180), Expect = 3e-11
Identities = 37/43 (86%), Positives = 39/43 (90%)
Frame = +1
Query: 88 TCELRLQVHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 216
T EL LQV+EILQKLLH FH IVPGYVMGGE+RSKEKARLRKG
Sbjct: 105 TRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKG 147
>ref|XP_002277600.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis
vinifera]
Length = 600
Score = 109 bits (272), Expect(2) = 8e-26
Identities = 63/117 (53%), Positives = 82/117 (70%)
Frame = +2
Query: 239 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 418
+GKEIEEIL LGSR +G +E+A + S+ QRQNLLLSAT N+K++HLA+ISLENPV
Sbjct: 198 FGKEIEEILDLLGSRTNGPTIREDAVT--SEFQRQNLLLSATLNEKVNHLAQISLENPVT 255
Query: 419 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 589
IG+D K+ K +H S+ DVD+ SE + K+ + S DY LP QL+QRYVK
Sbjct: 256 IGLDGKKMQ---PKPPLEHFGSVEFDVDEDSEKLHKIISPSNGDYKLPAQLVQRYVK 309
Score = 33.9 bits (76), Expect(2) = 8e-26
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +3
Query: 660 FLSVSCGSRLVILLSILRNLNER 728
++ V CGSRLV+LLSIL++L ER
Sbjct: 307 YVKVPCGSRLVVLLSILKHLFER 329
Score = 73.2 bits (178), Expect = 5e-11
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +1
Query: 88 TCELRLQVHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 216
T EL +QV+EILQKLLH FH IVPGYVMGGE+RSKEKARLRKG
Sbjct: 114 TRELCMQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKG 156
>ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533687|gb|EEF35422.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 603
Score = 109 bits (272), Expect(2) = 2e-24
Identities = 62/117 (52%), Positives = 77/117 (65%)
Frame = +2
Query: 239 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 418
+GKEIE+IL LGSR V K N S S QRQNLLLSAT N+K++HLA ISLENPVM
Sbjct: 199 FGKEIEDILDLLGSRLTRSVGKGNRDSSISNYQRQNLLLSATLNEKVNHLANISLENPVM 258
Query: 419 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 589
IG+D+ K+ E +H KS+ SD DD E K+ S D+ +P QL+Q+YVK
Sbjct: 259 IGLDDEKMQPEPLL---EHTKSLKSDADDELEHPSKVLKPSTGDFKVPVQLVQKYVK 312
Score = 29.6 bits (65), Expect(2) = 2e-24
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 660 FLSVSCGSRLVILLSILRNLNER 728
++ V CGSRL LLSIL++L E+
Sbjct: 310 YVKVPCGSRLATLLSILKHLFEK 332
Score = 72.0 bits (175), Expect = 1e-10
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = +1
Query: 88 TCELRLQVHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 216
T EL LQV+EILQ LLH FH IVPGY+MGGESRSKEKARLRKG
Sbjct: 115 TRELCLQVYEILQGLLHRFHWIVPGYIMGGESRSKEKARLRKG 157
>ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 596
Score = 105 bits (261), Expect(2) = 6e-24
Identities = 61/117 (52%), Positives = 78/117 (66%)
Frame = +2
Query: 239 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 418
+GK+IEEIL LGSRK G +EN SK QRQNLLLSAT N+K++HLAK+SL+NPVM
Sbjct: 193 FGKDIEEILDLLGSRKKGHGDQENTVLTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVM 252
Query: 419 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 589
IG+D K+ + K L S SD D ++ K+P + DY +P QLIQRY+K
Sbjct: 253 IGLDGKKME---PISTIKRLDSSESDEDSEDKYSSKVP--TVGDYKVPIQLIQRYMK 304
Score = 32.0 bits (71), Expect(2) = 6e-24
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 660 FLSVSCGSRLVILLSILRNLNER 728
++ V CGSRL +LLSIL++L ER
Sbjct: 302 YMKVPCGSRLPVLLSILKHLFER 324
Score = 72.0 bits (175), Expect = 1e-10
Identities = 35/43 (81%), Positives = 38/43 (88%)
Frame = +1
Query: 88 TCELRLQVHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 216
T EL LQV+EILQKLLH FH IVPGY+MGGE RSKEK+RLRKG
Sbjct: 109 TRELCLQVYEILQKLLHRFHWIVPGYIMGGEKRSKEKSRLRKG 151
>ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 591
Score = 103 bits (257), Expect(2) = 2e-23
Identities = 59/117 (50%), Positives = 75/117 (64%)
Frame = +2
Query: 239 YGKEIEEILGFLGSRKDGGVSKENAFSKDSKPQRQNLLLSAT*NDKMSHLAKISLENPVM 418
+GK IEEIL LGSRK G K+N SK QRQNLLLS T N++++HLAK+SL+NPVM
Sbjct: 193 FGKNIEEILDLLGSRKTGHDDKKNTVPTHSKMQRQNLLLSTTLNERVNHLAKMSLDNPVM 252
Query: 419 IGIDETKVSTELSKRSGKHLKSIGSDVDDGSEFIGKLPNFSEADYNLPTQLIQRYVK 589
IG+D K T + K L SD D ++ K+P + DY +P QLIQRY+K
Sbjct: 253 IGLDGKKNGTNFNI---KRLDPSESDEDSEDKYYSKVP--TVGDYKVPLQLIQRYMK 304
Score = 32.0 bits (71), Expect(2) = 2e-23
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 660 FLSVSCGSRLVILLSILRNLNER 728
++ V CGSRL +LLSIL++L ER
Sbjct: 302 YMKVPCGSRLPVLLSILKHLFER 324
Score = 72.8 bits (177), Expect = 7e-11
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +1
Query: 88 TCELRLQVHEILQKLLHHFH*IVPGYVMGGESRSKEKARLRKG 216
T EL LQV+EILQKLLH FH IVPGY+MGGE+RSKEKARLRKG
Sbjct: 109 TRELCLQVYEILQKLLHWFHWIVPGYIMGGENRSKEKARLRKG 151