BLASTX nr result
ID: Coptis24_contig00018262
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018262
(1160 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi... 383 e-104
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,... 377 e-102
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi... 375 e-101
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2... 371 e-100
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi... 351 2e-94
>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 383 bits (983), Expect = e-104
Identities = 187/337 (55%), Positives = 251/337 (74%)
Frame = -2
Query: 1150 AITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVELYE 971
+ITYN + RVLGR +S+ EFWS+V+EM+S G+++D+ Y ++S+ F++NKM++ AV+LYE
Sbjct: 265 SITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQFQKNKMLEDAVKLYE 324
Query: 970 VMMDSPNKPSLESCRILLWMISLDKNTDIDLAFRVFKKYEATGYALSKAVYDGIHRCLTN 791
+MMD P KPS++ C +LL ISL N D+ L FRV +KYEA G +L KAVYDGIHR LT+
Sbjct: 325 IMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSLCKAVYDGIHRSLTS 384
Query: 790 AGRFNEAEMILETMKTAGHEPDNITYSQVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKT 611
GRF+EA I+E+M++AG EPDNITYSQ++ GLC + ++EEA KLLDEMEA GC+PD+KT
Sbjct: 385 VGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKLLDEMEACGCVPDIKT 444
Query: 610 WTILIQGHCNARDIDQAMKCFTKMXXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMV 431
WTILIQGHC A+++D+A+ CF KM +NG Q R+DGAY L++EMV
Sbjct: 445 WTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLSQKRIDGAYKLLVEMV 504
Query: 430 DKANMRPLVATYKNLIQILLRERKIKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDA 251
+ A++ P ATYK +I LL RK++EA NLL LMKK N+ +PF YIS+FG V+DA
Sbjct: 505 NTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKKQNYPPFPEPFIEYISKFGTVEDA 564
Query: 250 SEFLKTLSTKQYPSSAAYYLLLESFLKEGRQSEARDL 140
EFL LS K+YPS +AY + ESF +EGR+SEA+DL
Sbjct: 565 GEFLNALSAKKYPSQSAYVHVFESFFQEGRESEAKDL 601
Score = 75.9 bits (185), Expect = 2e-11
Identities = 91/384 (23%), Positives = 150/384 (39%), Gaps = 36/384 (9%)
Frame = -2
Query: 1141 YNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVEL----- 977
Y+ +LR L ES+ +FW +++M+ G+ ID Y + F++ KM V L
Sbjct: 131 YSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMASEEVALTHFYN 190
Query: 976 ---YEVMMDSPNKPSLESCRILLWMISLDK------NTDID---------------LAFR 869
E MD K +E + +W ++K N+ D A R
Sbjct: 191 RMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELKNSFSDNFVLHVLRELRGYPLKALR 250
Query: 868 VFKKY-EATGYALSKAVYDGIHRCLTNAGRFNEAEMILETMKTAGHEPDNITYSQVLNGL 692
F+ E GY S Y+ I R L E ++E MK+ GHE D TY ++
Sbjct: 251 FFQWVGECPGYEHSSITYNVIARVLGRDDSIGEFWSMVEEMKSKGHEMDIDTYIKISRQF 310
Query: 691 CTSERMEEAYKLLDEMEAQGCIPDLKTWTILIQGHCNARDIDQAM--KCFTKMXXXXXXX 518
++ +E+A KL + M P ++ T+L++ + + D A+ + K
Sbjct: 311 QKNKMLEDAVKLYEIMMDGPYKPSVQDCTMLLRSISLSSNPDLALVFRVTEKYEAVGNSL 370
Query: 517 XXXXXXXXVNGLCGQGRVDGAYNLVIEMVDKANMRPLVATYKNLIQILLRERKIKEATNL 338
L GR D A ++E + A P TY L+ L + RK++EA L
Sbjct: 371 CKAVYDGIHRSLTSVGRFDEA-GKIMESMRSAGCEPDNITYSQLVYGLCKARKLEEACKL 429
Query: 337 LCLMKKHNFQTSLKPFNYYISRFGMVDDASE----FLKTLSTKQYPSSAAYYLLLESFLK 170
L M+ +K + I + + F K + + +L+ FL
Sbjct: 430 LDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLEVLINGFLS 489
Query: 169 EGRQSEARDLSESVLLSPEILVSW 98
+ R A L +++ LV W
Sbjct: 490 QKRIDGAYKLLVE-MVNTAHLVPW 512
>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 627
Score = 377 bits (969), Expect = e-102
Identities = 184/336 (54%), Positives = 246/336 (73%)
Frame = -2
Query: 1147 ITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVELYEV 968
ITYN + RVLGR +S+ EFWSVV+EM++AG+++D+ Y ++S+ F++NK++ AV+LYE
Sbjct: 264 ITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQFQKNKLMGDAVKLYEF 323
Query: 967 MMDSPNKPSLESCRILLWMISLDKNTDIDLAFRVFKKYEATGYALSKAVYDGIHRCLTNA 788
MMD P KPS++ C +LL IS D++L FRV KYEATG +LSKAVYDGIHR LT+
Sbjct: 324 MMDGPFKPSVQDCSMLLRSISASNYPDLNLVFRVVNKYEATGNSLSKAVYDGIHRSLTSI 383
Query: 787 GRFNEAEMILETMKTAGHEPDNITYSQVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKTW 608
G F+EA +++ M+TAG+EPDNITYSQ++ GLC + R+EEA ++LDEMEA GC+PD+KTW
Sbjct: 384 GNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKARRLEEACEVLDEMEAHGCLPDIKTW 443
Query: 607 TILIQGHCNARDIDQAMKCFTKMXXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMVD 428
TILIQGHC A ++ +A+ C KM +N Q R+DGAY L ++MVD
Sbjct: 444 TILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLAVLINAFLSQKRIDGAYTLFMDMVD 503
Query: 427 KANMRPLVATYKNLIQILLRERKIKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDAS 248
KA +RP ATYK LI+ LL RK++EA NLL LMK+HN +PF YISRFG VDDA+
Sbjct: 504 KARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQHNHPPFPEPFVQYISRFGTVDDAA 563
Query: 247 EFLKTLSTKQYPSSAAYYLLLESFLKEGRQSEARDL 140
+FLK LS K+YPS++AY + +SF + GR SEA+DL
Sbjct: 564 DFLKALSVKEYPSTSAYLNVFQSFFRAGRHSEAKDL 599
Score = 71.2 bits (173), Expect = 5e-10
Identities = 77/363 (21%), Positives = 142/363 (39%), Gaps = 36/363 (9%)
Frame = -2
Query: 1141 YNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVE------ 980
Y+ +LR+L +++S+ FW +++M+ G+ D Y + FR+ +M AV
Sbjct: 129 YSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDSDAVAFKHFFD 188
Query: 979 --LYEVMMDSPNKPSLESCRILLWMISLDKNTD-------IDLAFRVFKKY--------- 854
+ E MDS K + W ++K + + RV K+
Sbjct: 189 RMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGILLTDNFVIRVLKELRNYPLKALQ 248
Query: 853 ------EATGYALSKAVYDGIHRCLTNAGRFNEAEMILETMKTAGHEPDNITYSQVLNGL 692
+ Y + Y+ I R L E ++E MK AGHE D TY ++
Sbjct: 249 FFNWAGKCERYECNTITYNAIARVLGRDDSIGEFWSVVEEMKNAGHEMDIDTYIKISRQF 308
Query: 691 CTSERMEEAYKLLDEMEAQGCIPDLKTWTILIQ--GHCNARDIDQAMKCFTKMXXXXXXX 518
++ M +A KL + M P ++ ++L++ N D++ + K
Sbjct: 309 QKNKLMGDAVKLYEFMMDGPFKPSVQDCSMLLRSISASNYPDLNLVFRVVNKYEATGNSL 368
Query: 517 XXXXXXXXVNGLCGQGRVDGAYNLVIEMVDKANMRPLVATYKNLIQILLRERKIKEATNL 338
L G D A + ++ + A P TY L+ L + R+++EA +
Sbjct: 369 SKAVYDGIHRSLTSIGNFDEAAKM-MKCMQTAGYEPDNITYSQLVFGLCKARRLEEACEV 427
Query: 337 LCLMKKHNFQTSLKPFNYYISRFGMVDDASEFLKTLSTKQY----PSSAAYYLLLESFLK 170
L M+ H +K + I + ++ + L L+ P + +L+ +FL
Sbjct: 428 LDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLAVLINAFLS 487
Query: 169 EGR 161
+ R
Sbjct: 488 QKR 490
>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED:
pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 375 bits (962), Expect = e-101
Identities = 179/336 (53%), Positives = 248/336 (73%)
Frame = -2
Query: 1147 ITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVELYEV 968
++YN + RVLGR +S+ FW V++EM+ A ++ID+ Y ++S+ F+++KM+ AV+LYE+
Sbjct: 259 VSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDTYIKISRQFQKSKMMGEAVKLYEL 318
Query: 967 MMDSPNKPSLESCRILLWMISLDKNTDIDLAFRVFKKYEATGYALSKAVYDGIHRCLTNA 788
MMD P KPSL+ C +LL I+ N D+ L +RV KK+EATGY+LSKA+YDGIHR LT+
Sbjct: 319 MMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRVAKKFEATGYSLSKAMYDGIHRSLTST 378
Query: 787 GRFNEAEMILETMKTAGHEPDNITYSQVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKTW 608
G+F++AE I+++M+ AG+EPDN+TYSQ++ GLC + R+EEA K+LDEMEAQGCIPD+KTW
Sbjct: 379 GKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTW 438
Query: 607 TILIQGHCNARDIDQAMKCFTKMXXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMVD 428
TILIQGHCNA ++D A+ CF KM ++G Q +++GAY L+IE+ +
Sbjct: 439 TILIQGHCNANELDIALVCFAKMIEKNCDPDADLLDVLISGFLNQKKLNGAYQLLIELTN 498
Query: 427 KANMRPLVATYKNLIQILLRERKIKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDAS 248
KA++RP ATYK LI+ LL RK++EA LL LMKK N+ +PF YIS+FG V DA
Sbjct: 499 KAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKKQNYPPFPEPFVQYISKFGTVQDAD 558
Query: 247 EFLKTLSTKQYPSSAAYYLLLESFLKEGRQSEARDL 140
+FLK LS+K+YPS +AY + SF EGR SEA+DL
Sbjct: 559 DFLKVLSSKEYPSVSAYLHIFNSFFNEGRYSEAKDL 594
>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 371 bits (952), Expect = e-100
Identities = 182/336 (54%), Positives = 245/336 (72%)
Frame = -2
Query: 1147 ITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVELYEV 968
+TYN ++RVLGR +S+ EFWSVV EM++AGY++D+ Y ++S+ F++ K+++ AV LYE
Sbjct: 113 VTYNALVRVLGRDDSIGEFWSVVDEMKNAGYEMDIDTYIKISRQFQKIKLMEDAVRLYEF 172
Query: 967 MMDSPNKPSLESCRILLWMISLDKNTDIDLAFRVFKKYEATGYALSKAVYDGIHRCLTNA 788
MMD P KPS++ C ILL ++ N D+DL RV Y+ATG +LSK+VYDG+HR T+A
Sbjct: 173 MMDGPFKPSVQDCYILLRSVAASDNPDLDLVSRVVDGYKATGNSLSKSVYDGMHRSFTSA 232
Query: 787 GRFNEAEMILETMKTAGHEPDNITYSQVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKTW 608
G+F+EAE I++ M+ AG+EPDNITYSQ++ GLC S+R+EEA K+LDEMEA GCIPD+KTW
Sbjct: 233 GKFDEAEKIVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTW 292
Query: 607 TILIQGHCNARDIDQAMKCFTKMXXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMVD 428
TILIQGH A +D+ + C KM V G Q ++DGAY ++EMV+
Sbjct: 293 TILIQGHFAANQVDKGLLCLVKMTEKNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVN 352
Query: 427 KANMRPLVATYKNLIQILLRERKIKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDAS 248
K + P ATYK LI+ LL+ RK++EAT+LL LMKKHN+ +PF+ YIS+FG V+DA
Sbjct: 353 KLRLVPWQATYKLLIEKLLQVRKLEEATDLLRLMKKHNYPPFPEPFDQYISKFGTVEDAV 412
Query: 247 EFLKTLSTKQYPSSAAYYLLLESFLKEGRQSEARDL 140
F K LS K+YPSS AY +L+SFL+EGR SEARDL
Sbjct: 413 NFFKVLSVKEYPSSVAYLRMLDSFLREGRDSEARDL 448
>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 351 bits (901), Expect = 2e-94
Identities = 173/336 (51%), Positives = 231/336 (68%)
Frame = -2
Query: 1147 ITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVELYEV 968
+TYN V RVL R ES+ EFWSV++EM+ G+++D+ Y ++++ +RN+M++ AV+LYE+
Sbjct: 265 VTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYIKITRQLQRNRMMEDAVKLYEL 324
Query: 967 MMDSPNKPSLESCRILLWMISLDKNTDIDLAFRVFKKYEATGYALSKAVYDGIHRCLTNA 788
MMD KP ++ C +LL IS + ++DL FRV KKYE+TG+ LSKA+YDGIHR LT+A
Sbjct: 325 MMDGSCKPLVQDCNMLLKSISANDKPNLDLVFRVAKKYESTGHTLSKAIYDGIHRSLTSA 384
Query: 787 GRFNEAEMILETMKTAGHEPDNITYSQVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKTW 608
G F+EAE I+ TM+ AG+EPDNITYSQ++ GLC R EEA K+L++ME+ CIPD+KTW
Sbjct: 385 GNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTW 444
Query: 607 TILIQGHCNARDIDQAMKCFTKMXXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMVD 428
TILIQGHC+A ++D+A+ CF KM +G Q R++GAY LV E+
Sbjct: 445 TILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDVLADGFLSQKRIEGAYELVAEISR 504
Query: 427 KANMRPLVATYKNLIQILLRERKIKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDAS 248
K + P ATYK LI+ LL K +EA LL LMK HN+ PF YIS+FG V+DA
Sbjct: 505 KCRISPWQATYKKLIEKLLGVMKFEEALELLRLMKSHNYPPYHLPFVPYISKFGSVEDAE 564
Query: 247 EFLKTLSTKQYPSSAAYYLLLESFLKEGRQSEARDL 140
FLK LS K YPS Y + ES +EGR SEA+DL
Sbjct: 565 AFLKALSVKSYPSHIVYVQVFESLFREGRLSEAKDL 600
Score = 81.6 bits (200), Expect = 3e-13
Identities = 86/377 (22%), Positives = 150/377 (39%), Gaps = 37/377 (9%)
Frame = -2
Query: 1159 PICAITYNGVLRVLGRQESVNEFWSVVKEMESAGYDIDMFAYRRLSKNFRRNKMIKTAVE 980
P C++ Y+ ++R+L ++++ +FW ++ M+ G+ +D Y +S F+R KM +V
Sbjct: 125 PSCSV-YSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSVA 183
Query: 979 L---YEVMMDSPNKPSLESCRILL-----W-------MISLDKNTDIDLAFRVFKKYEAT 845
L Y M++ S+ S + + W + L+ + RV K+ T
Sbjct: 184 LTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEIQLSDNFVIRVLKELRKT 243
Query: 844 ---------------GYALSKAVYDGIHRCLTNAGRFNEAEMILETMKTAGHEPDNITYS 710
GY Y+ + R L A E ++E MK GHE D TY
Sbjct: 244 PLKAYKFFHWVGKQSGYEHDTVTYNAVARVLPRAESIEEFWSVIEEMKRVGHELDIDTYI 303
Query: 709 QVLNGLCTSERMEEAYKLLDEMEAQGCIPDLKTWTILIQGHCNARD---IDQAMKCFTKM 539
++ L + ME+A KL + M C P ++ +L++ +A D +D + K
Sbjct: 304 KITRQLQRNRMMEDAVKLYELMMDGSCKPLVQDCNMLLKS-ISANDKPNLDLVFRVAKKY 362
Query: 538 XXXXXXXXXXXXXXXVNGLCGQGRVDGAYNLVIEMVDKANMRPLVATYKNLIQILLRERK 359
L G D A N+V M A P TY ++ L + R+
Sbjct: 363 ESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTM-RNAGYEPDNITYSQMVFGLCKMRR 421
Query: 358 IKEATNLLCLMKKHNFQTSLKPFNYYISRFGMVDDASE----FLKTLSTKQYPSSAAYYL 191
+EA +L M+ +K + I ++ + F K + P + +
Sbjct: 422 FEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLDV 481
Query: 190 LLESFLKEGRQSEARDL 140
L + FL + R A +L
Sbjct: 482 LADGFLSQKRIEGAYEL 498