BLASTX nr result

ID: Coptis24_contig00018225 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018225
         (432 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37733.3| unnamed protein product [Vitis vinifera]              213   1e-53
ref|XP_002279899.1| PREDICTED: glutamate receptor 3.2 [Vitis vin...   213   1e-53
emb|CAN64711.1| hypothetical protein VITISV_043726 [Vitis vinifera]   213   1e-53
ref|XP_002520606.1| glutamate receptor 3 plant, putative [Ricinu...   213   1e-53
ref|XP_002313575.1| glutamate-gated kainate-type ion channel rec...   206   1e-51

>emb|CBI37733.3| unnamed protein product [Vitis vinifera]
          Length = 1147

 Score =  213 bits (543), Expect = 1e-53
 Identities = 100/142 (70%), Positives = 124/142 (87%)
 Frame = +3

Query: 6   LGDKLAERRCRISYKAALPPDPGATQAEITDTLVKVALMESRIIVVHTYSNSGLMVFDIA 185
           LGDKLAER+C+ISYKAALPPDP AT+ ++ + LVKV +MESR+IV+HT S +GL+VFD+A
Sbjct: 409 LGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVA 468

Query: 186 KHLRMIDTGYVWIATTWLSTVLDSKSPLSPNVGRSLQGVLTLRPHTPPSEKKKSFFSRWS 365
           K+L M+++GYVWIA+TWLST+LDS +PLS     S+QGVLTLRPHTP S+KK+ F SRW+
Sbjct: 469 KYLGMMESGYVWIASTWLSTILDS-TPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWN 527

Query: 366 QLSNGTIGLNPYGLYAYDTVWI 431
            LSNGTIGLNPYGLYAYDTVW+
Sbjct: 528 HLSNGTIGLNPYGLYAYDTVWM 549


>ref|XP_002279899.1| PREDICTED: glutamate receptor 3.2 [Vitis vinifera]
          Length = 917

 Score =  213 bits (543), Expect = 1e-53
 Identities = 100/142 (70%), Positives = 124/142 (87%)
 Frame = +3

Query: 6   LGDKLAERRCRISYKAALPPDPGATQAEITDTLVKVALMESRIIVVHTYSNSGLMVFDIA 185
           LGDKLAER+C+ISYKAALPPDP AT+ ++ + LVKV +MESR+IV+HT S +GL+VFD+A
Sbjct: 179 LGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVA 238

Query: 186 KHLRMIDTGYVWIATTWLSTVLDSKSPLSPNVGRSLQGVLTLRPHTPPSEKKKSFFSRWS 365
           K+L M+++GYVWIA+TWLST+LDS +PLS     S+QGVLTLRPHTP S+KK+ F SRW+
Sbjct: 239 KYLGMMESGYVWIASTWLSTILDS-TPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWN 297

Query: 366 QLSNGTIGLNPYGLYAYDTVWI 431
            LSNGTIGLNPYGLYAYDTVW+
Sbjct: 298 HLSNGTIGLNPYGLYAYDTVWM 319


>emb|CAN64711.1| hypothetical protein VITISV_043726 [Vitis vinifera]
          Length = 959

 Score =  213 bits (543), Expect = 1e-53
 Identities = 100/142 (70%), Positives = 124/142 (87%)
 Frame = +3

Query: 6   LGDKLAERRCRISYKAALPPDPGATQAEITDTLVKVALMESRIIVVHTYSNSGLMVFDIA 185
           LGDKLAER+C+ISYKAALPPDP AT+ ++ + LVKV +MESR+IV+HT S +GL+VFD+A
Sbjct: 221 LGDKLAERQCKISYKAALPPDPKATRDQVFNELVKVRMMESRVIVLHTLSKTGLLVFDVA 280

Query: 186 KHLRMIDTGYVWIATTWLSTVLDSKSPLSPNVGRSLQGVLTLRPHTPPSEKKKSFFSRWS 365
           K+L M+++GYVWIA+TWLST+LDS +PLS     S+QGVLTLRPHTP S+KK+ F SRW+
Sbjct: 281 KYLGMMESGYVWIASTWLSTILDS-TPLSSKTADSIQGVLTLRPHTPDSKKKREFSSRWN 339

Query: 366 QLSNGTIGLNPYGLYAYDTVWI 431
            LSNGTIGLNPYGLYAYDTVW+
Sbjct: 340 HLSNGTIGLNPYGLYAYDTVWM 361


>ref|XP_002520606.1| glutamate receptor 3 plant, putative [Ricinus communis]
           gi|223540205|gb|EEF41779.1| glutamate receptor 3 plant,
           putative [Ricinus communis]
          Length = 924

 Score =  213 bits (542), Expect = 1e-53
 Identities = 97/143 (67%), Positives = 121/143 (84%)
 Frame = +3

Query: 3   ALGDKLAERRCRISYKAALPPDPGATQAEITDTLVKVALMESRIIVVHTYSNSGLMVFDI 182
           ALGDKLAERRCRISYKAALPPDP A ++++ D LVK+  MESR+IV+HT+S +GL+VFD+
Sbjct: 177 ALGDKLAERRCRISYKAALPPDPTANRSDVQDELVKILRMESRVIVLHTFSRTGLLVFDV 236

Query: 183 AKHLRMIDTGYVWIATTWLSTVLDSKSPLSPNVGRSLQGVLTLRPHTPPSEKKKSFFSRW 362
           A+ L M++ G+VWIATTWLSTVLDS SPL      S+QGV+T RPHTP S++K+ F SRW
Sbjct: 237 AQSLGMMEKGFVWIATTWLSTVLDSNSPLPSKTANSIQGVITFRPHTPDSKRKRDFESRW 296

Query: 363 SQLSNGTIGLNPYGLYAYDTVWI 431
           ++LSNG+IGLNPY LYAYDTVW+
Sbjct: 297 NKLSNGSIGLNPYALYAYDTVWM 319


>ref|XP_002313575.1| glutamate-gated kainate-type ion channel receptor subunit GluR5
           [Populus trichocarpa] gi|222849983|gb|EEE87530.1|
           glutamate-gated kainate-type ion channel receptor
           subunit GluR5 [Populus trichocarpa]
          Length = 900

 Score =  206 bits (525), Expect = 1e-51
 Identities = 96/142 (67%), Positives = 120/142 (84%)
 Frame = +3

Query: 6   LGDKLAERRCRISYKAALPPDPGATQAEITDTLVKVALMESRIIVVHTYSNSGLMVFDIA 185
           LGDKLAERRC+ISYKAALPP+P AT+++I D L K+  MESR+IV++T+S +GL+VFD+A
Sbjct: 180 LGDKLAERRCKISYKAALPPEPKATRSDIQDELAKILGMESRVIVLNTFSKTGLLVFDVA 239

Query: 186 KHLRMIDTGYVWIATTWLSTVLDSKSPLSPNVGRSLQGVLTLRPHTPPSEKKKSFFSRWS 365
           K L M++ G+VWI T+WLSTV+DS SPL P    S+QGVL LRPHTP S++K  F SRW+
Sbjct: 240 KALGMMENGFVWIVTSWLSTVIDSASPL-PTTANSIQGVLALRPHTPDSKRKGDFMSRWN 298

Query: 366 QLSNGTIGLNPYGLYAYDTVWI 431
           QLSNG+IGLNPYGLYAYDTVW+
Sbjct: 299 QLSNGSIGLNPYGLYAYDTVWL 320


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