BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018216
         (968 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containi...   462   e-128
ref|XP_002524769.1| pentatricopeptide repeat-containing protein,...   453   e-125
ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containi...   429   e-118
ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containi...   425   e-117
ref|XP_002322993.1| predicted protein [Populus trichocarpa] gi|2...   414   e-113

>ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
            [Vitis vinifera] gi|296086664|emb|CBI32299.3| unnamed
            protein product [Vitis vinifera]
          Length = 494

 Score =  462 bits (1190), Expect = e-128
 Identities = 223/315 (70%), Positives = 268/315 (85%)
 Frame = -3

Query: 945  MVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQSLF 766
            M  EEYAKGI++AGRTKNVDLAV LF EA++K IKT+STYNALMGA M N   +KCQ+LF
Sbjct: 135  MTSEEYAKGISVAGRTKNVDLAVELFTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALF 194

Query: 765  RDLKREITCGPTIVTYNILLSVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGYVT 586
            RDLKRE +C PTIVTYNIL+SVFGRLMLVDHMEATFR+I+   L+PN++TYN+II+GYVT
Sbjct: 195  RDLKREASCSPTIVTYNILISVFGRLMLVDHMEATFREIKELELSPNISTYNNIIAGYVT 254

Query: 585  AWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEVPL 406
            AWMW  ME  +RTM+E  ++P+++THLLMLRGY+HSGNL+KME+TYE++K H+N+ E+PL
Sbjct: 255  AWMWNRMEDTFRTMKEDNIQPDINTHLLMLRGYAHSGNLQKMEETYELIKGHVNDKEIPL 314

Query: 405  IRVMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVMLIKLYAQEDLVDTMEIFIGQA 226
            IR MI AYCKSS  DRV K+ AL+KLIPE+EYR WLNVMLI++YAQED V+ ME  I +A
Sbjct: 315  IRAMICAYCKSSITDRVEKIGALMKLIPENEYRPWLNVMLIRVYAQEDWVEEMENSINEA 374

Query: 225  FEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSANR 46
            FEH TSV T+ VMRSIIA+YFRC+AV+RL +FVKRAE  GW ICRSLYHCKMVMY+S  R
Sbjct: 375  FEHKTSVKTMRVMRSIIATYFRCNAVDRLANFVKRAECGGWHICRSLYHCKMVMYASQKR 434

Query: 45   LEEMENVLKEMERFN 1
            LEEME+VL EME  N
Sbjct: 435  LEEMESVLNEMESSN 449


>ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535953|gb|EEF37612.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 509

 Score =  453 bits (1166), Expect = e-125
 Identities = 212/315 (67%), Positives = 265/315 (84%)
 Frame = -3

Query: 945  MVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQSLF 766
            M  EEYAKGITIAGR KNVDLA+ +F EA  K  K +  YNALMGA MYN   DKCQSLF
Sbjct: 150  MTHEEYAKGITIAGRAKNVDLAIEIFAEACSKRRKKTCIYNALMGAYMYNGHYDKCQSLF 209

Query: 765  RDLKREITCGPTIVTYNILLSVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGYVT 586
             D K+E   GP++VTYNIL+SVFGR MLVDHMEATFR++ N N++PN++TYN++I+GYVT
Sbjct: 210  LDFKKEANIGPSVVTYNILISVFGRSMLVDHMEATFRELMNLNISPNVSTYNNLIAGYVT 269

Query: 585  AWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEVPL 406
            AWMW+DME+V++ M+EGP+ P + T+LLMLRGY+HSGN+EKME+ Y++V+DH+N NEVPL
Sbjct: 270  AWMWDDMEQVFQLMKEGPIYPHLDTYLLMLRGYAHSGNIEKMEEMYKLVQDHVNVNEVPL 329

Query: 405  IRVMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVMLIKLYAQEDLVDTMEIFIGQA 226
            IR MI AYCKSS  DR+ K+E LL+LIPE+EYR WLNV+LIK+YAQ++L++ ME  I +A
Sbjct: 330  IRTMICAYCKSSITDRIKKIEELLRLIPEEEYRPWLNVLLIKVYAQQNLLEAMENKIDEA 389

Query: 225  FEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSANR 46
            F+H T++ TVG+MR+IIASYFRC+AV+RL  FVKRAE SGWRICRSLYHCKMVMY+S  R
Sbjct: 390  FKHETTITTVGIMRTIIASYFRCNAVDRLADFVKRAECSGWRICRSLYHCKMVMYASEKR 449

Query: 45   LEEMENVLKEMERFN 1
            L+EME+VL +ME FN
Sbjct: 450  LDEMESVLNDMENFN 464


>ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Cucumis sativus] gi|449494249|ref|XP_004159492.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At2g30780-like [Cucumis sativus]
          Length = 514

 Score =  429 bits (1102), Expect = e-118
 Identities = 205/315 (65%), Positives = 253/315 (80%)
 Frame = -3

Query: 945  MVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQSLF 766
            +  EEYAKGI +AG++K++DLAV LF EAS+K +K +STYNALMG  M+N L DKC S+F
Sbjct: 153  LTVEEYAKGIAVAGKSKHIDLAVGLFNEASNKRVKATSTYNALMGVFMFNGLADKCNSVF 212

Query: 765  RDLKREITCGPTIVTYNILLSVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGYVT 586
            RDLKR+  C P IVTYNIL+SVFGRLMLVDHMEAT R+I N NL+PN+NTYN +I+GY+T
Sbjct: 213  RDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPNVNTYNSLIAGYIT 272

Query: 585  AWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEVPL 406
            AWMW+ ME+ +  M+   + P   T LLMLRGY+HS NLEKME+ +  +KDH+N+N  PL
Sbjct: 273  AWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHHFLKDHVNKNNFPL 332

Query: 405  IRVMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVMLIKLYAQEDLVDTMEIFIGQA 226
            IR MI AY +SS  D+V K++ALLKLIPE+EYR WLNV LI++YAQ D ++ ME  I +A
Sbjct: 333  IRAMIYAYSRSSITDKVHKIDALLKLIPEEEYRPWLNVKLIRVYAQADCLERMENSINEA 392

Query: 225  FEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSANR 46
            FEH TSV TV VMRSIIASYFRC+AV++L +F+ RAE SGWRICRSLYHCKMVM++S NR
Sbjct: 393  FEHGTSVYTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSLYHCKMVMFASQNR 452

Query: 45   LEEMENVLKEMERFN 1
            LEEME VL EM+ FN
Sbjct: 453  LEEMECVLDEMKNFN 467


>ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780-like
            [Glycine max]
          Length = 442

 Score =  425 bits (1093), Expect = e-117
 Identities = 202/308 (65%), Positives = 250/308 (81%)
 Frame = -3

Query: 933  EYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQSLFRDLK 754
            EY+KGI  AGR+ NVDLAV LFKEA+ KGIKT+ TYNALMGA M+N LPD CQSLF DLK
Sbjct: 88   EYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGAFMFNGLPDNCQSLFCDLK 147

Query: 753  REITCGPTIVTYNILLSVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGYVTAWMW 574
            R++TC P+I TYNILLSV+GRLMLVDHMEATF +IQ  NL  N+ TYNH+I+GY+TAWMW
Sbjct: 148  RDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAMNICTYNHLIAGYITAWMW 207

Query: 573  EDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEVPLIRVM 394
            +DME+V++ ++   V+P + THLLMLRGY++SGNLEKME+ Y  ++DH+N  E+ LIR M
Sbjct: 208  DDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMYSFIRDHVNIKEISLIRCM 267

Query: 393  ISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVMLIKLYAQEDLVDTMEIFIGQAFEHN 214
            I AYC+SS  DR+ K+E LLK IP+ EYR WLNV+LIKLYA+ED +  ME  I +AFEH 
Sbjct: 268  ICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAKEDWLAKMENAINEAFEHG 327

Query: 213  TSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSANRLEEM 34
            TS+ T G++R IIA+Y+RC+AVE+L +FV+RAE SGW ICRSLYHCK+VMY S   L EM
Sbjct: 328  TSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRSLYHCKLVMYGSQMTLLEM 387

Query: 33   ENVLKEME 10
             NVL+EME
Sbjct: 388  HNVLEEME 395


>ref|XP_002322993.1| predicted protein [Populus trichocarpa] gi|222867623|gb|EEF04754.1|
           predicted protein [Populus trichocarpa]
          Length = 360

 Score =  414 bits (1063), Expect = e-113
 Identities = 195/315 (61%), Positives = 251/315 (79%)
 Frame = -3

Query: 945 MVFEEYAKGITIAGRTKNVDLAVILFKEASDKGIKTSSTYNALMGACMYNDLPDKCQSLF 766
           M   EYAKGI IAG  KNVDLAV +F EA  K IKT+S YNALM ACM N L  KC+SLF
Sbjct: 1   MTAAEYAKGIMIAGTDKNVDLAVEIFDEAIKKCIKTTSMYNALMTACMCNGLAGKCESLF 60

Query: 765 RDLKREITCGPTIVTYNILLSVFGRLMLVDHMEATFRDIQNSNLTPNLNTYNHIISGYVT 586
           R++KR++ C P++VTYNIL+SVFGRLMLVD MEA F+++++S ++PNL TYN++ISGYVT
Sbjct: 61  REMKRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTYNNLISGYVT 120

Query: 585 AWMWEDMERVYRTMEEGPVKPEVSTHLLMLRGYSHSGNLEKMEKTYEIVKDHINENEVPL 406
            WMW+ ME+ ++ M  GPVKP+++THLLMLRGY+HSG+LE+ME  YE++KDH+N   + L
Sbjct: 121 VWMWDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTL 180

Query: 405 IRVMISAYCKSSDKDRVSKVEALLKLIPEDEYRAWLNVMLIKLYAQEDLVDTMEIFIGQA 226
           IR MI AYCKSS  +RV K+EAL++LIPE EYR WLNV+LIKLYA+ED ++ ME  I +A
Sbjct: 181 IRAMICAYCKSSIPERVQKIEALMRLIPEKEYRPWLNVLLIKLYAEEDRLEGMENSINEA 240

Query: 225 FEHNTSVITVGVMRSIIASYFRCDAVERLTSFVKRAEYSGWRICRSLYHCKMVMYSSANR 46
           F H  ++ TV +M++II SYFRC+AV++LT F+KRA Y+ WRI R L+HCKMVMY +  R
Sbjct: 241 FNHRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKR 300

Query: 45  LEEMENVLKEMERFN 1
           L+EME+VL EME  N
Sbjct: 301 LDEMESVLIEMENCN 315