BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018212
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003591979.1| Pentatricopeptide repeat-containing protein ...   152   4e-35
ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containi...   148   4e-34
emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]   148   4e-34
ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_002523895.1| pentatricopeptide repeat-containing protein,...   139   3e-31

>ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481027|gb|AES62230.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  152 bits (383), Expect = 4e-35
 Identities = 73/105 (69%), Positives = 84/105 (80%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SPDC TYNT+++GYCK G MA AY+ M EM RKGLK+DTF+LNT LH +C EK+LDDAY 
Sbjct: 418 SPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYT 477

Query: 182 LLHNA--KGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           L   A  +GY LDEV+YGTLIMGYFKDE  DRALKLW EMK+ GI
Sbjct: 478 LTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGI 522



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           P+  TYN L+HGYCK   +  A E +  M  KG+  D ++ NT +  LC E K+D+A  L
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRL 338

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
               + + L  D V+Y TLI G F+    D A KL  EMK +G+
Sbjct: 339 RDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGV 382



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  T N ++HGYC EG +  A++  ++M+   LK D F+ N  L  LC+E  L+    L
Sbjct: 559 PDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTL 618

Query: 185 LHN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
            +   +KG  +D V+Y  +I  + K+  ++ A  L  EM+ K +
Sbjct: 619 FNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNL 662



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  T N L+ G C+EG +       +  + KG  MDT + N  +   CKE++L+DA++L
Sbjct: 594 PDIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDL 653

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKG 307
           +   +G +L  D  +Y  ++ G  K    + A KL  +  +KG
Sbjct: 654 MTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKG 696


>ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  148 bits (374), Expect = 4e-34
 Identities = 71/105 (67%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SPDCVTYNTL++GYCK GNM  A+ TM EM RK +KMD+ +LNT L  LC+EKKL++AY+
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 182 LLHNA--KGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           LL +A  +GY +DEVSYGTLI+GYFKD +VDRALKLW EMK+K I
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEI 519



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  TYNT++HGYC+EG++  A++  ++M+    K D F+ N  L  LC E  L+ A +L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKL 615

Query: 185 LHN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKK 304
            +   +KG  +D V+Y TLI    K+  +D A  L  EM++K
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           P+  TYN L++GYCK G +  A   +  M +  L  D ++ N  ++ LC E ++++A++L
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
               +   L  D VSY TLI G  +   +  A KL  EM +KG+
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  T N L+ G C EG +  A +  +  + KG  +DT + NT +  LCKE +LDDA+ L
Sbjct: 591 PDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNL 650

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKG 307
           L   +  +L  D  +Y  +I        +  A +   +M +KG
Sbjct: 651 LSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 8   DCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYELL 187
           D V+Y TL+ GY K+GN+  A +   EM  K +   T + N  +  LC+  K + A   L
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 188 HN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEM 295
           +     G   DE +Y T++ GY ++ DV++A +   +M
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584


>emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  148 bits (374), Expect = 4e-34
 Identities = 71/105 (67%), Positives = 87/105 (82%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SPDCVTYNTL++GYCK GNM  A+ TM EM RK +KMD+ +LNT L  LC+EKKL++AY+
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 182 LLHNA--KGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           LL +A  +GY +DEVSYGTLI+GYFKD +VDRALKLW EMK+K I
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEI 519



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  TYNT++HGYC+EG++  A++  ++M+    K D F+ N  L  LC E  L+ A +L
Sbjct: 556 PDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKL 615

Query: 185 LHN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKK 304
            +   +KG  +D V+Y TLI    K+  +D A  L  EM++K
Sbjct: 616 FNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK 657



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           P+  TYN L++GYCK G +  A   +  M +  L  D ++ N  ++ LC E ++++A++L
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
               +   L  D VSY TLI G  +   +  A KL  EM +KG+
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  T N L+ G C EG +  A +  +  + KG  +DT + NT +  LCKE +LDDA+ L
Sbjct: 591 PDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNL 650

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKG 307
           L   +  +L  D  +Y  +I        +  A +   +M +KG
Sbjct: 651 LSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKG 693



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 8   DCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYELL 187
           D V+Y TL+ GY K+GN+  A +   EM  K +   T + N  +  LC+  K + A   L
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 188 HN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEM 295
           +     G   DE +Y T++ GY ++ DV++A +   +M
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584


>ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
           gi|449529106|ref|XP_004171542.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  139 bits (351), Expect = 2e-31
 Identities = 69/105 (65%), Positives = 80/105 (76%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SPDCVTYNTL+  YCK G M  A+  M EM  KGLK+DT++LNT LH LC EKKLD+AY 
Sbjct: 420 SPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYN 479

Query: 182 LLHNA--KGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           LL +A  +GY LDEVSYG LI+GYFKDE  DRAL LW EMK++ I
Sbjct: 480 LLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQI 524



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  TYN ++HG+C EGN+  A++  +EM+    K D ++ N  L  LC+E  L+ A +L
Sbjct: 561 PDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKL 620

Query: 185 LHN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKK 304
            +   +KG D+D V+Y T+I    K+   + A  L  EM+ K
Sbjct: 621 FNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAK 662



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  T N L+ G C+EG +  A +  + ++ KG  +D  + NT +  LCKE K ++AY+L
Sbjct: 596 PDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDL 655

Query: 185 L--HNAKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           L    AK    D+ +Y  +I        +  A +   +M + GI
Sbjct: 656 LTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SP+  TYN L+ GYC+ G +  A + +  M R  L    ++ N  ++  C + K+D+A+ 
Sbjct: 280 SPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFR 339

Query: 182 LLHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           +    +  ++  D V+Y TLI G  +  D      L  EM KKG+
Sbjct: 340 IRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGV 384


>ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536825|gb|EEF38464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 784

 Score =  139 bits (349), Expect = 3e-31
 Identities = 67/105 (63%), Positives = 83/105 (79%), Gaps = 2/105 (1%)
 Frame = +2

Query: 2   SPDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYE 181
           SPDCVT+NTL++GYCK G ++ A+  M EM RKGLKM++ +LNT LH LC E+KLDDAY+
Sbjct: 419 SPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYK 478

Query: 182 LLHNA--KGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
           LL +A  +GY +DEVSYGTLIMGYFKD     A+KLW EMK+K I
Sbjct: 479 LLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEI 523



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 40/102 (39%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           PD  TYNT++ GYC+EG +  A++  ++M++K  K D F+ N  L  LC E  LD A +L
Sbjct: 560 PDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKL 619

Query: 185 LHN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKK 304
            +   +KG  +D V+Y T+I G  K++  + A  L  EM++K
Sbjct: 620 FNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEK 661



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
 Frame = +2

Query: 8   DCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYELL 187
           D V+Y TL+ GY K+G    A +   EM  K +     + NT +  LC   K D + + L
Sbjct: 491 DEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKL 550

Query: 188 HN--AKGYDLDEVSYGTLIMGYFKDEDVDRALKLWGEMKKK 304
           +     G   DE +Y T+I+GY ++  V++A +   +M KK
Sbjct: 551 NELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKK 591



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
 Frame = +2

Query: 5   PDCVTYNTLMHGYCKEGNMAAAYETMHEMLRKGLKMDTFSLNTFLHVLCKEKKLDDAYEL 184
           P+  T+N L+ GYCK G +  A + +  M +  +  D ++ N  +  LCK+ K+D+A+ L
Sbjct: 280 PNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRL 339

Query: 185 LHNAKGYDL--DEVSYGTLIMGYFKDEDVDRALKLWGEMKKKGI 310
               +   L  D V+Y TLI G F      +  +L  +M+ KG+
Sbjct: 340 KDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383