BLASTX nr result
ID: Coptis24_contig00018200
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018200
(1164 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004134297.1| PREDICTED: pre-rRNA-processing protein esf1-... 56 1e-12
ref|XP_004155170.1| PREDICTED: pre-rRNA-processing protein esf1-... 56 1e-12
emb|CBI25839.3| unnamed protein product [Vitis vinifera] 50 1e-09
ref|XP_002269957.2| PREDICTED: pre-rRNA-processing protein esf1-... 50 1e-09
gb|ADE77018.1| unknown [Picea sitchensis] 52 9e-09
>ref|XP_004134297.1| PREDICTED: pre-rRNA-processing protein esf1-like [Cucumis sativus]
Length = 740
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 36/101 (35%)
Frame = -1
Query: 714 AYHLYL-LSFHVPKGGEVLSVAIYSSDVEAAKAPIESIHS-------------------- 598
A LY+ LS +PKGG++LSVA+Y S+ + E +H
Sbjct: 226 AVDLYVVLSSFLPKGGQILSVAVYPSEFGLQRMKEEELHGPVGLFDGEQKKNDEDDDDDN 285
Query: 597 -----DNS----------RCYFAVVECDSCATADYIYETCD 520
DN R Y+AVVECDS ATADY+Y+TCD
Sbjct: 286 DDEEMDNEKLRAYEMSRLRYYYAVVECDSIATADYLYKTCD 326
Score = 43.5 bits (101), Expect(2) = 1e-12
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Frame = -2
Query: 512 DVLDLYLIPDSVKFEHPPHDVVRKGA---KIMDYMKPPQEIEDEPYYWNGIESE-CAILS 345
++LDL IPDS+KFEHPP D + +++++ P + W+ E + L
Sbjct: 335 NILDLRFIPDSMKFEHPPRDTATEAPSSYEVLNFHTPALQHSKIHLSWDEDEPQRVKALK 394
Query: 344 FKVNLDKL-DGXXXXXXXXXXXXXXXXXXDGV----IPGAKMDKYFSLLQVD-DGRND-A 186
K N D+L D DG K DKY +LLQ D DG D
Sbjct: 395 RKFNADQLADLELKEFLASDESESDDESDDGEDQVDKKRKKGDKYRALLQSDEDGEQDGG 454
Query: 185 KDMEVTISIG 156
+DMEVT + G
Sbjct: 455 QDMEVTFNTG 464
>ref|XP_004155170.1| PREDICTED: pre-rRNA-processing protein esf1-like [Cucumis sativus]
Length = 735
Score = 56.2 bits (134), Expect(2) = 1e-12
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 36/101 (35%)
Frame = -1
Query: 714 AYHLYL-LSFHVPKGGEVLSVAIYSSDVEAAKAPIESIHS-------------------- 598
A LY+ LS +PKGG++LSVA+Y S+ + E +H
Sbjct: 221 AVDLYVVLSSFLPKGGQILSVAVYPSEFGLQRMKEEELHGPVGLFDGEQKKNDEDDDDDN 280
Query: 597 -----DNS----------RCYFAVVECDSCATADYIYETCD 520
DN R Y+AVVECDS ATADY+Y+TCD
Sbjct: 281 DDEEMDNEKLRAYEMSRLRYYYAVVECDSIATADYLYKTCD 321
Score = 43.5 bits (101), Expect(2) = 1e-12
Identities = 42/130 (32%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Frame = -2
Query: 512 DVLDLYLIPDSVKFEHPPHDVVRKGA---KIMDYMKPPQEIEDEPYYWNGIESE-CAILS 345
++LDL IPDS+KFEHPP D + +++++ P + W+ E + L
Sbjct: 330 NILDLRFIPDSMKFEHPPRDTATEAPSSYEVLNFHTPALQHSKIHLSWDEDEPQRVKALK 389
Query: 344 FKVNLDKL-DGXXXXXXXXXXXXXXXXXXDGV----IPGAKMDKYFSLLQVD-DGRND-A 186
K N D+L D DG K DKY +LLQ D DG D
Sbjct: 390 RKFNADQLADLELKEFLASDESESDDESDDGEDQVDKKRKKGDKYRALLQSDEDGEQDGG 449
Query: 185 KDMEVTISIG 156
+DMEVT + G
Sbjct: 450 QDMEVTFNTG 459
>emb|CBI25839.3| unnamed protein product [Vitis vinifera]
Length = 738
Score = 50.4 bits (119), Expect(2) = 1e-09
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 30/90 (33%)
Frame = -1
Query: 699 LLSFHVPKGGEVLSVAIYSSDVEAAKAPIESIHS-------------------------- 598
+LS +PK G +LSVAIY S+ + E++H
Sbjct: 207 VLSSFLPKDGHILSVAIYPSEFGLKRMEEEAVHGPIGLFDDEKEQSDDDGDNEIDDEKLR 266
Query: 597 --DNSRC--YFAVVECDSCATADYIYETCD 520
+ SR Y+AVV+CDS ATADY+Y+ CD
Sbjct: 267 AYEKSRLSYYYAVVDCDSSATADYLYKACD 296
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Frame = -2
Query: 512 DVLDLYLIPDSVKFEHPPHDVVRKG-AKI--MDYMKPPQEIEDEPYYWNGIESECA-ILS 345
+VLDL IPDS++F+HPPHD+ + AK +D+ + W+ E + A L
Sbjct: 305 NVLDLRFIPDSMEFKHPPHDIATEAPAKYEGLDFHTRALQHSKIHISWDEDEPQRAKTLK 364
Query: 344 FKVNLDK-----LDGXXXXXXXXXXXXXXXXXXDGVIPGAKMDKYFSLLQVDDG-----R 195
K N D+ + + +KY +LL+ DG
Sbjct: 365 RKYNDDEQAELAMKEFLASDTDESETDDNENDDQSDKEHKRQNKYLALLESGDGSDRDDE 424
Query: 194 NDAKDMEVTISIG--GRTKCINGKNKNYWYDLIWDKYVECR 78
D +DMEVT + G +K I K + + +W+ Y++ R
Sbjct: 425 EDGQDMEVTFNTGLEDISKRILEKREKK-SETVWEAYLKKR 464
>ref|XP_002269957.2| PREDICTED: pre-rRNA-processing protein esf1-like [Vitis vinifera]
Length = 726
Score = 50.4 bits (119), Expect(2) = 1e-09
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 30/90 (33%)
Frame = -1
Query: 699 LLSFHVPKGGEVLSVAIYSSDVEAAKAPIESIHS-------------------------- 598
+LS +PK G +LSVAIY S+ + E++H
Sbjct: 207 VLSSFLPKDGHILSVAIYPSEFGLKRMEEEAVHGPIGLFDDEKEQSDDDGDNEIDDEKLR 266
Query: 597 --DNSRC--YFAVVECDSCATADYIYETCD 520
+ SR Y+AVV+CDS ATADY+Y+ CD
Sbjct: 267 AYEKSRLSYYYAVVDCDSSATADYLYKACD 296
Score = 39.3 bits (90), Expect(2) = 1e-09
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 16/161 (9%)
Frame = -2
Query: 512 DVLDLYLIPDSVKFEHPPHDVVRKG-AKI--MDYMKPPQEIEDEPYYWNGIESECA-ILS 345
+VLDL IPDS++F+HPPHD+ + AK +D+ + W+ E + A L
Sbjct: 305 NVLDLRFIPDSMEFKHPPHDIATEAPAKYEGLDFHTRALQHSKIHISWDEDEPQRAKTLK 364
Query: 344 FKVNLDK-----LDGXXXXXXXXXXXXXXXXXXDGVIPGAKMDKYFSLLQVDDG-----R 195
K N D+ + + +KY +LL+ DG
Sbjct: 365 RKYNDDEVAELAMKEFLASDTDESETDDNENDDQSDKEHKRQNKYLALLESGDGSDRDDE 424
Query: 194 NDAKDMEVTISIG--GRTKCINGKNKNYWYDLIWDKYVECR 78
D +DMEVT + G +K I K + + +W+ Y++ R
Sbjct: 425 EDGQDMEVTFNTGLEDISKRILEKREKK-SETVWEAYLKKR 464
>gb|ADE77018.1| unknown [Picea sitchensis]
Length = 178
Score = 52.0 bits (123), Expect(2) = 9e-09
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 28/90 (31%)
Frame = -1
Query: 705 LYLLSFHVPKGGEVLSVAIYSSDV-------EAAKAP---------------------IE 610
L ++ +PKGG++L+VA+Y S+ EA + P +
Sbjct: 12 LVCMNCFLPKGGQILTVAVYPSEFGLKRMAEEAVRGPALFGSDDESSEDDQDELENEKLR 71
Query: 609 SIHSDNSRCYFAVVECDSCATADYIYETCD 520
D R YFAV+ECDS AT+ Y+Y+ CD
Sbjct: 72 QYEKDRLRYYFAVIECDSSATSGYLYKACD 101
Score = 35.0 bits (79), Expect(2) = 9e-09
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2
Query: 518 TPDVLDLYLIPDSVKFEHPPHDV 450
T +VLDL IPD ++F+HPP D+
Sbjct: 108 TSNVLDLRFIPDDMEFDHPPRDI 130