BLASTX nr result
ID: Coptis24_contig00018191
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00018191
(249 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,... 88 6e-16
ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|2... 88 6e-16
emb|CBI34156.3| unnamed protein product [Vitis vinifera] 87 1e-15
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat... 87 1e-15
ref|XP_002333182.1| predicted protein [Populus trichocarpa] gi|2... 87 1e-15
>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 594
Score = 88.2 bits (217), Expect = 6e-16
Identities = 44/81 (54%), Positives = 54/81 (66%)
Frame = +3
Query: 6 ILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAK 185
I PD T+ I +D CK GMV EA + MIERG N VTY+SLMDGYCL +M EA+
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439
Query: 186 SVFDLMVAIGHGPIIVSYSIL 248
VFD+MV G P ++SY+IL
Sbjct: 440 KVFDIMVNKGCAPDVLSYNIL 460
Score = 61.6 bits (148), Expect = 6e-08
Identities = 31/78 (39%), Positives = 49/78 (62%)
Frame = +3
Query: 12 PDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAKSV 191
PD T+ I++DA CK+G+V EA +F MI+ E + VTYSSL+ G C KE+ ++
Sbjct: 312 PDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTL 371
Query: 192 FDLMVAIGHGPIIVSYSI 245
+ M++ P +V++SI
Sbjct: 372 LNEMLSRNIRPDVVTFSI 389
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G PD +Y I+I CK +DEA +LF M +G N++T+++L+ G C GR A
Sbjct: 449 GCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAA 508
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
K +F M + G P +++YS L
Sbjct: 509 KELFKKMGSHGCPPDLITYSTL 530
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +3
Query: 12 PDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAKSV 191
P+ +Y IIID+ CK+ +V+EA +LF M G VTY+SL+ G C G+ K+A +
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301
Query: 192 FDLMVAIGHGPIIVSYSIL 248
F M+ P +V++SIL
Sbjct: 302 FKEMLEWNMKPDVVTFSIL 320
Score = 56.6 bits (135), Expect = 2e-06
Identities = 33/82 (40%), Positives = 45/82 (54%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
GI P TY +I C G +A LF+ M+E + + VT+S L+D C +G + EA
Sbjct: 274 GISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEA 333
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
SVF M+ I P IV+YS L
Sbjct: 334 LSVFGKMIQIAMEPDIVTYSSL 355
Score = 55.8 bits (133), Expect = 3e-06
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G+ P+ TY ++D C +DEA ++F M+ +G + ++Y+ L+ GYC R+ EA
Sbjct: 414 GLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
K +FD M G P ++++ L
Sbjct: 474 KQLFDEMSHKGLTPNSITHTTL 495
>ref|XP_002328355.1| predicted protein [Populus trichocarpa] gi|222838070|gb|EEE76435.1|
predicted protein [Populus trichocarpa]
Length = 608
Score = 88.2 bits (217), Expect = 6e-16
Identities = 42/81 (51%), Positives = 57/81 (70%)
Frame = +3
Query: 6 ILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAK 185
++PD T I++D CK+GMV EA +F+TM E+G E N TY++LMDGYCLQ M EAK
Sbjct: 294 VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAK 353
Query: 186 SVFDLMVAIGHGPIIVSYSIL 248
VF++M+ G P + SY+IL
Sbjct: 354 KVFEIMIRQGCAPGVHSYNIL 374
Score = 67.8 bits (164), Expect = 9e-10
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G P H+Y I+I+ CK +DEA L M + +TVTYS+LM G C GR KEA
Sbjct: 363 GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEA 422
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
++F M + G P +V+YSIL
Sbjct: 423 LNIFKEMCSYGLLPNLVTYSIL 444
Score = 64.7 bits (156), Expect = 7e-09
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G PD TY IID+ CKD +V++A E M++RG N TY+ ++ G+C+ G++ EA
Sbjct: 223 GCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEA 282
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
+F MV P V+ +IL
Sbjct: 283 TRLFKEMVGRDVMPDTVTLTIL 304
Score = 63.9 bits (154), Expect = 1e-08
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
GI P T+ +I+ C +G + EA ELF M+ RG E N ++Y+++++G C G A
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
VF M G P +V+Y+ +
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTI 234
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/82 (36%), Positives = 53/82 (64%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G+LP+ TY I++D CK G +DEA +L ++M E+ E N V ++ L++G + G+++ A
Sbjct: 433 GLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVA 492
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
K +F + A G P I +Y+++
Sbjct: 493 KELFSKLFADGIRPTIRTYTVM 514
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
GI P+ TY ++ C G ++EA LF+ M+ R +TVT + L+DG C +G + EA
Sbjct: 258 GIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEA 317
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
+ VF+ M G P I +Y+ L
Sbjct: 318 RLVFETMTEKGVEPNISTYNAL 339
>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 87.4 bits (215), Expect = 1e-15
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +3
Query: 6 ILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAK 185
ILPD + ++DA CK+G V EA E+ MI+RG E + VTY++LMDG+CLQ M EA
Sbjct: 251 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 310
Query: 186 SVFDLMVAIGHGPIIVSYSIL 248
VFD+MV G P ++SY+ L
Sbjct: 311 KVFDMMVRKGFAPDVISYTTL 331
Score = 54.3 bits (129), Expect = 1e-05
Identities = 25/82 (30%), Positives = 49/82 (59%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G+ P+ +T I+I++ C V AF + +++ G + + T+++L+ G C++G++ EA
Sbjct: 75 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 134
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
+FD M+ G P +V+Y L
Sbjct: 135 LHLFDKMIDEGFQPNVVTYGTL 156
>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 87.4 bits (215), Expect = 1e-15
Identities = 41/81 (50%), Positives = 55/81 (67%)
Frame = +3
Query: 6 ILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAK 185
ILPD + ++DA CK+G V EA E+ MI+RG E + VTY++LMDG+CLQ M EA
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321
Query: 186 SVFDLMVAIGHGPIIVSYSIL 248
VFD+MV G P ++SY+ L
Sbjct: 322 KVFDMMVRKGFAPDVISYTTL 342
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G PD +Y +I+ CK +D+A LF+ M + +T TY++LM G C GR+++A
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDA 390
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
++F MVA G P +V+YSIL
Sbjct: 391 IALFHEMVARGQMPDLVTYSIL 412
Score = 54.3 bits (129), Expect = 1e-05
Identities = 25/82 (30%), Positives = 49/82 (59%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G+ P+ +T I+I++ C V AF + +++ G + + T+++L+ G C++G++ EA
Sbjct: 86 GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEA 145
Query: 183 KSVFDLMVAIGHGPIIVSYSIL 248
+FD M+ G P +V+Y L
Sbjct: 146 LHLFDKMIDEGFQPNVVTYGTL 167
>ref|XP_002333182.1| predicted protein [Populus trichocarpa] gi|222835036|gb|EEE73485.1|
predicted protein [Populus trichocarpa]
Length = 319
Score = 87.4 bits (215), Expect = 1e-15
Identities = 42/81 (51%), Positives = 58/81 (71%)
Frame = +3
Query: 6 ILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEAK 185
I+PD T+ I++D CK G + EA + +TMIE+G E NTVTYSSLM+GY LQ R+ EA+
Sbjct: 6 IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65
Query: 186 SVFDLMVAIGHGPIIVSYSIL 248
VF+ M+ G P ++SY+IL
Sbjct: 66 KVFNAMITRGCIPDVLSYNIL 86
Score = 57.4 bits (137), Expect = 1e-06
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +3
Query: 3 GILPDGHTYGIIIDACCKDGMVDEAFELFQTMIERGDEANTVTYSSLMDGYCLQGRMKEA 182
G +PD +Y I+I+ CCK +DEA ++F M RG NT TY++L+ G+ K+
Sbjct: 75 GCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGF-----WKQK 129
Query: 183 KSVFDLMVAIGHGPIIVSYSI 245
+F M A G P +V+YSI
Sbjct: 130 IQLFKDMHAQGCSPDLVTYSI 150