BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018125
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   304   9e-81
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   291   6e-77
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   291   6e-77
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           291   6e-77
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   288   7e-76

>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  304 bits (778), Expect = 9e-81
 Identities = 143/204 (70%), Positives = 177/204 (86%)
 Frame = +2

Query: 2    FSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQPE 181
            F+Q+EGVDYNE+FSPVV+HTSIRVLL++VAH NLELEQLDVKTAFLHG+LEEEIYM QP+
Sbjct: 864  FNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPD 923

Query: 182  GFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGNDF 361
            GF V  KE++VCKL +SLYGLKQSPRQWYKRFD++M++  YTRS YDCCVY+ RL  + F
Sbjct: 924  GFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSF 983

Query: 362  IYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVSQ 541
            IYL+LYVDDMLIA+K   +I KLK  LS+EFEMKDLG A+KILGMEI RDR++R++ +SQ
Sbjct: 984  IYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQ 1043

Query: 542  KKYLQKVISRFGMENAKSVSTPLA 613
            + Y+QKV++RFGM ++K + TP A
Sbjct: 1044 RSYIQKVLARFGMSSSKPIDTPSA 1067


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  291 bits (745), Expect = 6e-77
 Identities = 144/204 (70%), Positives = 169/204 (82%)
 Frame = +2

Query: 2    FSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQPE 181
            +SQ  GVDYN+VFSPVVKH+SIR  LS+VA  +LELEQLDVKTAFLHG+LEE+IYM QPE
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 182  GFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGNDF 361
            GF+V  KE YVCKL RSLYGLKQSPRQW KRFD+FM+ H + RSKYD CVY + + G+  
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP- 1008

Query: 362  IYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVSQ 541
            IYLLLYVDDMLIA+KS +EI KLK  LSSEF+MKDLG AKKILGMEI RDRK   + +SQ
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068

Query: 542  KKYLQKVISRFGMENAKSVSTPLA 613
              Y++KV+ RF M+NAK+VSTP+A
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIA 1092


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  291 bits (745), Expect = 6e-77
 Identities = 144/204 (70%), Positives = 169/204 (82%)
 Frame = +2

Query: 2    FSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQPE 181
            +SQ  GVDYN+VFSPVVKH+SIR  LS+VA  +LELEQLDVKTAFLHG+LEE+IYM QPE
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 182  GFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGNDF 361
            GF+V  KE YVCKL RSLYGLKQSPRQW KRFD+FM+ H + RSKYD CVY + + G+  
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP- 1008

Query: 362  IYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVSQ 541
            IYLLLYVDDMLIA+KS +EI KLK  LSSEF+MKDLG AKKILGMEI RDRK   + +SQ
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1068

Query: 542  KKYLQKVISRFGMENAKSVSTPLA 613
              Y++KV+ RF M+NAK+VSTP+A
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIA 1092


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  291 bits (745), Expect = 6e-77
 Identities = 144/204 (70%), Positives = 169/204 (82%)
 Frame = +2

Query: 2    FSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQPE 181
            +SQ  GVDYN+VFSPVVKH+SIR  LS+VA  +LELEQLDVKTAFLHG+LEE+IYM QPE
Sbjct: 892  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 951

Query: 182  GFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGNDF 361
            GF+V  KE YVCKL RSLYGLKQSPRQW KRFD+FM+ H + RSKYD CVY + + G+  
Sbjct: 952  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP- 1010

Query: 362  IYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVSQ 541
            IYLLLYVDDMLIA+KS +EI KLK  LSSEF+MKDLG AKKILGMEI RDRK   + +SQ
Sbjct: 1011 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQ 1070

Query: 542  KKYLQKVISRFGMENAKSVSTPLA 613
              Y++KV+ RF M+NAK+VSTP+A
Sbjct: 1071 HNYIKKVLQRFNMQNAKAVSTPIA 1094


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  288 bits (736), Expect = 7e-76
 Identities = 143/204 (70%), Positives = 168/204 (82%)
 Frame = +2

Query: 2    FSQKEGVDYNEVFSPVVKHTSIRVLLSLVAHFNLELEQLDVKTAFLHGDLEEEIYMRQPE 181
            +SQ  GVDYN+VFSPVVKH+SIR  LS+VA  +LELEQLDVKTAFLHG+LEE+IYM QPE
Sbjct: 890  YSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPE 949

Query: 182  GFVVAEKEDYVCKLNRSLYGLKQSPRQWYKRFDTFMMQHEYTRSKYDCCVYFRRLRGNDF 361
            GF+V  KE YVCKL RSLYGLKQSPRQW KRFD+FM+ H + RSKYD CVY + + G+  
Sbjct: 950  GFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP- 1008

Query: 362  IYLLLYVDDMLIASKSMVEIDKLKSQLSSEFEMKDLGGAKKILGMEIDRDRKKRRIVVSQ 541
            IYLLLYVDDMLIA+KS +EI KLK  LSSEF+MKDLG AKKIL MEI RDRK   + +SQ
Sbjct: 1009 IYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQ 1068

Query: 542  KKYLQKVISRFGMENAKSVSTPLA 613
              Y++KV+ RF M+NAK+VSTP+A
Sbjct: 1069 HNYIKKVLQRFNMQNAKAVSTPIA 1092