BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018077
         (486 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   128   5e-28
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    128   5e-28
gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis tha...   128   5e-28
dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]                    128   5e-28
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   127   9e-28

>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  128 bits (321), Expect = 5e-28
 Identities = 70/136 (51%), Positives = 87/136 (63%)
 Frame = -3

Query: 409  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 230
            YFLGI+    PTGLHLS  +YI+ LL R +M   KP    +    +LS+ SG  L D TE
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244

Query: 229  YRQLVDSLQYLAFTHPDIVYAVHHVVQFMSAPHTLHLIAANRILRYLKSSLECGLLIRRS 50
            YR +V SLQYLAFT PDI YAV+ + QFM  P   HL A  RILRYL  +   G+ +++ 
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304

Query: 49   PTLLAVRAYSDADWAG 2
             T L++ AYSDADWAG
Sbjct: 1305 NT-LSLHAYSDADWAG 1319


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  128 bits (321), Expect = 5e-28
 Identities = 70/136 (51%), Positives = 87/136 (63%)
 Frame = -3

Query: 409  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 230
            YFLGI+    PTGLHLS  +YI+ LL R +M   KP    +    +LS+ SG  L D TE
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244

Query: 229  YRQLVDSLQYLAFTHPDIVYAVHHVVQFMSAPHTLHLIAANRILRYLKSSLECGLLIRRS 50
            YR +V SLQYLAFT PDI YAV+ + QFM  P   HL A  RILRYL  +   G+ +++ 
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304

Query: 49   PTLLAVRAYSDADWAG 2
             T L++ AYSDADWAG
Sbjct: 1305 NT-LSLHAYSDADWAG 1319


>gb|AAK62793.1|AC027036_14 polyprotein, putative [Arabidopsis thaliana]
            gi|338746561|dbj|BAK41510.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  128 bits (321), Expect = 5e-28
 Identities = 70/136 (51%), Positives = 87/136 (63%)
 Frame = -3

Query: 409  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 230
            YFLGI+    PTGLHLS  +YI+ LL R +M   KP    +    +LS+ SG  L D TE
Sbjct: 1185 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1244

Query: 229  YRQLVDSLQYLAFTHPDIVYAVHHVVQFMSAPHTLHLIAANRILRYLKSSLECGLLIRRS 50
            YR +V SLQYLAFT PDI YAV+ + QFM  P   HL A  RILRYL  +   G+ +++ 
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304

Query: 49   PTLLAVRAYSDADWAG 2
             T L++ AYSDADWAG
Sbjct: 1305 NT-LSLHAYSDADWAG 1319


>dbj|BAA78423.1| polyprotein [Arabidopsis thaliana]
          Length = 1431

 Score =  128 bits (321), Expect = 5e-28
 Identities = 70/136 (51%), Positives = 87/136 (63%)
 Frame = -3

Query: 409  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLPDATE 230
            YFLGI+    PTGLHLS  +YI+ LL R +M   KP    +    +LS+ SG  L D TE
Sbjct: 1150 YFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTE 1209

Query: 229  YRQLVDSLQYLAFTHPDIVYAVHHVVQFMSAPHTLHLIAANRILRYLKSSLECGLLIRRS 50
            YR +V SLQYLAFT PDI YAV+ + QFM  P   HL A  RILRYL  +   G+ +++ 
Sbjct: 1210 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1269

Query: 49   PTLLAVRAYSDADWAG 2
             T L++ AYSDADWAG
Sbjct: 1270 NT-LSLHAYSDADWAG 1284


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  127 bits (319), Expect = 9e-28
 Identities = 68/138 (49%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
 Frame = -3

Query: 409  YFLGIDITSTPTGLHLS*TKYIVGLLRRYSMTECKPYGILVCAKSQLSVSSGDPLP--DA 236
            YFLGI++T    G+ L+  KY+  LLRR +M +CKP    +    +LS++ GDPL   DA
Sbjct: 967  YFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDA 1026

Query: 235  TEYRQLVDSLQYLAFTHPDIVYAVHHVVQFMSAPHTLHLIAANRILRYLKSSLECGLLIR 56
            T YR +V +LQYL  T PDI + V+ V QF+ AP T H  A  RILRYLK     GL + 
Sbjct: 1027 THYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLS 1086

Query: 55   RSPTLLAVRAYSDADWAG 2
            +S ++L V AYSDADWAG
Sbjct: 1087 KSRSML-VSAYSDADWAG 1103