BLASTX nr result

ID: Coptis24_contig00018047 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018047
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301476.1| multidrug resistance protein ABC transporter...   159   2e-37
emb|CBI36841.3| unnamed protein product [Vitis vinifera]              155   2e-36
ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4...   155   2e-36
ref|XP_002523063.1| multidrug resistance-associated protein 2, 6...   154   5e-36
ref|XP_002321011.1| multidrug resistance protein ABC transporter...   148   5e-34

>ref|XP_002301476.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222843202|gb|EEE80749.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1508

 Score =  159 bits (402), Expect = 2e-37
 Identities = 82/130 (63%), Positives = 99/130 (76%), Gaps = 3/130 (2%)
 Frame = +3

Query: 3    TILLVTHQVEFLHNTNLILVMRDGKIVQSGKYNYLLEPGSDFGALVATHKTSMELVEMN- 179
            TILLVTHQV+FLHN +LI VMRDG+IVQSGKYN LL  G DFGALVA H TSMELVE + 
Sbjct: 819  TILLVTHQVDFLHNVDLISVMRDGQIVQSGKYNDLLVSGLDFGALVAAHDTSMELVEASS 878

Query: 180  --DSKHSPKPPITQKPACPYPQVANGQNKSLGHSKSEKGTSKLIKDEERETGHVSFRVYK 353
               S++SP+PP + +      + ANG+NK L H KS+KGTSKLI++EER TG++   VYK
Sbjct: 879  EISSENSPRPPKSPRGPSKLGE-ANGENKLLDHPKSDKGTSKLIEEEERATGNIGLHVYK 937

Query: 354  TYSTEAYGWW 383
             Y TEA+GWW
Sbjct: 938  QYCTEAFGWW 947


>emb|CBI36841.3| unnamed protein product [Vitis vinifera]
          Length = 1079

 Score =  155 bits (393), Expect = 2e-36
 Identities = 87/130 (66%), Positives = 99/130 (76%), Gaps = 4/130 (3%)
 Frame = +3

Query: 3   TILLVTHQVEFLHNTNLILVMRDGKIVQSGKYNYLLEPGSDFGALVATHKTSMELVE--- 173
           TILLVTHQV+FLHN +LILVMRDG IVQSGKYN LLE G DF ALVA H+TSMELVE   
Sbjct: 389 TILLVTHQVDFLHNVDLILVMRDGMIVQSGKYNDLLESGMDFKALVAAHETSMELVEEAG 448

Query: 174 -MNDSKHSPKPPITQKPACPYPQVANGQNKSLGHSKSEKGTSKLIKDEERETGHVSFRVY 350
               S++SPK P + +P   + + ANG +KS   SKS K +SKLIKDEERETG VSF+VY
Sbjct: 449 PAITSENSPKLPQSPQPFSNHGE-ANGVDKSGDQSKSNKESSKLIKDEERETGKVSFQVY 507

Query: 351 KTYSTEAYGW 380
           K Y TEAYGW
Sbjct: 508 KQYCTEAYGW 517


>ref|XP_002265012.1| PREDICTED: ABC transporter C family member 4-like [Vitis vinifera]
          Length = 1509

 Score =  155 bits (393), Expect = 2e-36
 Identities = 87/130 (66%), Positives = 99/130 (76%), Gaps = 4/130 (3%)
 Frame = +3

Query: 3    TILLVTHQVEFLHNTNLILVMRDGKIVQSGKYNYLLEPGSDFGALVATHKTSMELVE--- 173
            TILLVTHQV+FLHN +LILVMRDG IVQSGKYN LLE G DF ALVA H+TSMELVE   
Sbjct: 819  TILLVTHQVDFLHNVDLILVMRDGMIVQSGKYNDLLESGMDFKALVAAHETSMELVEEAG 878

Query: 174  -MNDSKHSPKPPITQKPACPYPQVANGQNKSLGHSKSEKGTSKLIKDEERETGHVSFRVY 350
                S++SPK P + +P   + + ANG +KS   SKS K +SKLIKDEERETG VSF+VY
Sbjct: 879  PAITSENSPKLPQSPQPFSNHGE-ANGVDKSGDQSKSNKESSKLIKDEERETGKVSFQVY 937

Query: 351  KTYSTEAYGW 380
            K Y TEAYGW
Sbjct: 938  KQYCTEAYGW 947


>ref|XP_002523063.1| multidrug resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
            gi|223537625|gb|EEF39248.1| multidrug
            resistance-associated protein 2, 6 (mrp2, 6),
            abc-transoprter, putative [Ricinus communis]
          Length = 1506

 Score =  154 bits (390), Expect = 5e-36
 Identities = 79/130 (60%), Positives = 98/130 (75%), Gaps = 3/130 (2%)
 Frame = +3

Query: 3    TILLVTHQVEFLHNTNLILVMRDGKIVQSGKYNYLLEPGSDFGALVATHKTSMELVEMND 182
            TILLVTHQV+FLHN +LI+VMRDG IVQSGKYN L++ G DFGALVA H T+MELVE   
Sbjct: 817  TILLVTHQVDFLHNIDLIMVMRDGMIVQSGKYNNLVKSGMDFGALVAAHDTAMELVEAGT 876

Query: 183  S---KHSPKPPITQKPACPYPQVANGQNKSLGHSKSEKGTSKLIKDEERETGHVSFRVYK 353
            +   ++SP+PP + + +    + ANG+NK L   KSEKGTSKL+++EERETG V   VYK
Sbjct: 877  AVPGENSPRPPKSPQSSSNALE-ANGENKHLDQPKSEKGTSKLVEEEERETGKVGLHVYK 935

Query: 354  TYSTEAYGWW 383
             Y T A+GWW
Sbjct: 936  QYCTAAFGWW 945


>ref|XP_002321011.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222861784|gb|EEE99326.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1507

 Score =  148 bits (373), Expect = 5e-34
 Identities = 78/130 (60%), Positives = 95/130 (73%), Gaps = 3/130 (2%)
 Frame = +3

Query: 3    TILLVTHQVEFLHNTNLILVMRDGKIVQSGKYNYLLEPGSDFGALVATHKTSMELVEMN- 179
            TILLVTHQV+FLHN +LI VMRDG+IVQSGKYN LL  G DFGALVA H+TSMEL+E++ 
Sbjct: 818  TILLVTHQVDFLHNVDLISVMRDGQIVQSGKYNDLLASGLDFGALVAAHETSMELLEVSA 877

Query: 180  --DSKHSPKPPITQKPACPYPQVANGQNKSLGHSKSEKGTSKLIKDEERETGHVSFRVYK 353
               S++SP PP   +      +  N +NK L   KS+KG SKLI++EER TG+V   VYK
Sbjct: 878  EIPSENSPTPPKFSQGLSKIGE-ENDENKLLDQPKSDKGNSKLIEEEERATGNVGLHVYK 936

Query: 354  TYSTEAYGWW 383
             Y TEA+GWW
Sbjct: 937  QYCTEAFGWW 946


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