BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00018003
         (1639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   762   0.0  
ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 ...   754   0.0  
ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|2...   749   0.0  
emb|CBI15412.3| unnamed protein product [Vitis vinifera]              749   0.0  
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-...   737   0.0  

>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
            gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
            MSH2, putative [Ricinus communis]
          Length = 936

 Score =  762 bits (1967), Expect = 0.0
 Identities = 382/473 (80%), Positives = 418/473 (88%)
 Frame = -3

Query: 1634 YDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXKGTQFGHVFRITKKEEPKI 1455
            YD  L+ALKDE++++E QIHNLHKQTA +            KGTQFGHVFRITKKEEPKI
Sbjct: 465  YDPALSALKDEQESLECQIHNLHKQTAQDLDLPQDKGLKLDKGTQFGHVFRITKKEEPKI 524

Query: 1454 RKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSEV 1275
            RKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ+++EEY +CQKELV RVV+TAATFSEV
Sbjct: 525  RKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVQTAATFSEV 584

Query: 1274 FDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVNFI 1095
            F SLAG+LS++DVLLSFADLA SCPTPYTRP IT SD G+I+L GSRHPCVEAQD VNFI
Sbjct: 585  FKSLAGLLSQLDVLLSFADLATSCPTPYTRPDITPSDVGNIILEGSRHPCVEAQDWVNFI 644

Query: 1094 SNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR 915
             NDC L+RGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+ASISVRDCIFAR
Sbjct: 645  PNDCKLIRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFAR 704

Query: 914  VGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLV 735
            VGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLV
Sbjct: 705  VGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLV 764

Query: 734  EVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLTMLYKVEP 555
            +V +APTLFATHFHELT LA E A  EP  K   GVAN+HVSAHIDSS RKLTMLYKVEP
Sbjct: 765  QVIKAPTLFATHFHELTGLADEKA--EPHMKQIAGVANYHVSAHIDSSNRKLTMLYKVEP 822

Query: 554  GACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPD 375
            GACDQSFGIHVAEFANFPESVVALAREKAAELEDFS  +I SND  E+VGSKR R C PD
Sbjct: 823  GACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPNAIVSNDTTEKVGSKRNRKCDPD 882

Query: 374  DISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 216
            D+SRGAARAHKFL++FS LP++ MDL++ L+ VSKL+  L KDAA+C WL+QF
Sbjct: 883  DVSRGAARAHKFLKEFSDLPLETMDLKEALQQVSKLKEGLEKDAANCQWLKQF 935


>ref|XP_002275304.2| PREDICTED: DNA mismatch repair protein Msh2 [Vitis vinifera]
          Length = 902

 Score =  754 bits (1947), Expect = 0.0
 Identities = 372/474 (78%), Positives = 421/474 (88%)
 Frame = -3

Query: 1637 GYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXKGTQFGHVFRITKKEEPK 1458
            GYD+ LA+LK++++ +E QIHNLHKQTA +            KGTQFGHVFRITKKEEPK
Sbjct: 428  GYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPK 487

Query: 1457 IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 1278
            IRKKLT +FIVLETRKDGVKFTN+KLKKLGDQYQ++L+EY  CQ+ELV RVV+TAATFSE
Sbjct: 488  IRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSE 547

Query: 1277 VFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVNF 1098
            VF++LA +LSE+DVLLSFADLA S PT YTRP I+ S  GDI+L GSRHPCVEAQD VNF
Sbjct: 548  VFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNF 607

Query: 1097 ISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFA 918
            I NDC LVR +SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+ISVRDCIFA
Sbjct: 608  IPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFA 667

Query: 917  RVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHL 738
            RVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLAWAICEH+
Sbjct: 668  RVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHI 727

Query: 737  VEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLTMLYKVE 558
            VEV +APTLFATHFHELTALA+EN D++P +K  +GVAN+HVSAHIDSS+RKLTMLYKVE
Sbjct: 728  VEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVE 787

Query: 557  PGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGP 378
            PGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS   I SNDA ++VGSKRKR   P
Sbjct: 788  PGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKVGSKRKRESSP 847

Query: 377  DDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 216
            DDISRGAARAH+FL++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF
Sbjct: 848  DDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 901


>ref|XP_002317931.1| predicted protein [Populus trichocarpa] gi|222858604|gb|EEE96151.1|
            predicted protein [Populus trichocarpa]
          Length = 944

 Score =  749 bits (1935), Expect = 0.0
 Identities = 368/474 (77%), Positives = 416/474 (87%)
 Frame = -3

Query: 1637 GYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXKGTQFGHVFRITKKEEPK 1458
            GY++ L ALK E++++E QIHNLHKQTA++            KGTQ+GHVFRITKKEEPK
Sbjct: 470  GYEAALGALKAEQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRITKKEEPK 529

Query: 1457 IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 1278
            IRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ+++E Y S QKELV+RVV+  ATFSE
Sbjct: 530  IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVENYKSRQKELVSRVVQITATFSE 589

Query: 1277 VFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVNF 1098
            VF+ L+G+LSE+DVLLSFADLA SCPTPYTRP IT SD GDI+L GSRHPCVEAQD VNF
Sbjct: 590  VFEKLSGLLSEMDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNF 649

Query: 1097 ISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFA 918
            I NDC LVRG+SWFQIITGPNMGGKSTFIRQ+GVNILMAQVGSF+PCD+A+ISVRDCIFA
Sbjct: 650  IPNDCKLVRGKSWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATISVRDCIFA 709

Query: 917  RVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHL 738
            RVGAGDCQ+RGVSTFMQEMLETASI+KGATD+SLIIIDELGRGTSTYDGFGLAWAICEHL
Sbjct: 710  RVGAGDCQMRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHL 769

Query: 737  VEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLTMLYKVE 558
            V   +APTLFATHFHELTALA++  D EP  K  +GVAN+HVSAHIDSS  KLTMLYKVE
Sbjct: 770  VRELKAPTLFATHFHELTALAHQKPDQEPHAKQIVGVANYHVSAHIDSSNHKLTMLYKVE 829

Query: 557  PGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGP 378
            PGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS  +I S+DA+EEVGSKRKR C  
Sbjct: 830  PGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTAIISDDAREEVGSKRKRECNM 889

Query: 377  DDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 216
            DD+S+GAARAH+FL+DFS LP+D MDL+Q L  + KL+++L KDA +C WL+QF
Sbjct: 890  DDMSKGAARAHRFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQF 943


>emb|CBI15412.3| unnamed protein product [Vitis vinifera]
          Length = 945

 Score =  749 bits (1933), Expect = 0.0
 Identities = 372/477 (77%), Positives = 421/477 (88%), Gaps = 3/477 (0%)
 Frame = -3

Query: 1637 GYDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXKGTQFGHVFRITKKEEPK 1458
            GYD+ LA+LK++++ +E QIHNLHKQTA +            KGTQFGHVFRITKKEEPK
Sbjct: 468  GYDAKLASLKNDQETLELQIHNLHKQTAIDLDLPMDKSLKLEKGTQFGHVFRITKKEEPK 527

Query: 1457 IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 1278
            IRKKLT +FIVLETRKDGVKFTN+KLKKLGDQYQ++L+EY  CQ+ELV RVV+TAATFSE
Sbjct: 528  IRKKLTAKFIVLETRKDGVKFTNTKLKKLGDQYQKILDEYKDCQRELVVRVVQTAATFSE 587

Query: 1277 VFDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVNF 1098
            VF++LA +LSE+DVLLSFADLA S PT YTRP I+ S  GDI+L GSRHPCVEAQD VNF
Sbjct: 588  VFENLARLLSELDVLLSFADLATSSPTAYTRPEISPSHMGDIILEGSRHPCVEAQDWVNF 647

Query: 1097 ISNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFA 918
            I NDC LVR +SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD+A+ISVRDCIFA
Sbjct: 648  IPNDCKLVREKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKANISVRDCIFA 707

Query: 917  RVGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHL 738
            RVGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLAWAICEH+
Sbjct: 708  RVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHI 767

Query: 737  VEVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLTMLYKVE 558
            VEV +APTLFATHFHELTALA+EN D++P +K  +GVAN+HVSAHIDSS+RKLTMLYKVE
Sbjct: 768  VEVIKAPTLFATHFHELTALAHENTDHQPPEKQIVGVANYHVSAHIDSSSRKLTMLYKVE 827

Query: 557  PGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKE---EVGSKRKRV 387
            PGACDQSFGIHVAEFANFPESVV LAREKAAELEDFS   I SNDA +   +VGSKRKR 
Sbjct: 828  PGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPTEIVSNDASDKGLKVGSKRKRE 887

Query: 386  CGPDDISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQF 216
              PDDISRGAARAH+FL++FS LP+++MDL++ L+ VSKL+N+L KDA +C WL+QF
Sbjct: 888  SSPDDISRGAARAHQFLKEFSDLPLEKMDLKEALQQVSKLKNDLEKDAVNCHWLQQF 944


>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max]
          Length = 942

 Score =  737 bits (1903), Expect = 0.0
 Identities = 371/474 (78%), Positives = 411/474 (86%)
 Frame = -3

Query: 1634 YDSNLAALKDERDAVEQQIHNLHKQTANEXXXXXXXXXXXXKGTQFGHVFRITKKEEPKI 1455
            YDS LA LKD+++ +E QI NLH+QTA++            KGTQFGHVFRITKKEEPKI
Sbjct: 470  YDSILANLKDQQELLESQIQNLHRQTADDLDLPMDKALKLDKGTQFGHVFRITKKEEPKI 529

Query: 1454 RKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSEV 1275
            RKKL TQFI+LETRKDGVKFTN+KLKKLGDQYQ++LEEY SCQK+LV RVV+TAATFSEV
Sbjct: 530  RKKLNTQFIILETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSEV 589

Query: 1274 FDSLAGILSEIDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVNFI 1095
            F+SLA I+SE+DVLLSFADLA SCPTPYTRP IT SDEGDI L G RHPCVEAQD VNFI
Sbjct: 590  FESLAEIISELDVLLSFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEAQDWVNFI 649

Query: 1094 SNDCTLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFAR 915
             NDC LVRG++WFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCD ASISVRDCIFAR
Sbjct: 650  PNDCKLVRGKTWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDNASISVRDCIFAR 709

Query: 914  VGAGDCQLRGVSTFMQEMLETASIIKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLV 735
            VGAGDCQLRGVSTFMQEMLETASI+KGATDKSLIIIDELGRGTSTYDGFGLAWAICEH+V
Sbjct: 710  VGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIV 769

Query: 734  EVTRAPTLFATHFHELTALAYENADNEPSKKSTLGVANFHVSAHIDSSTRKLTMLYKVEP 555
            EV +APTLFATHFHELTALA EN  N+ S+K  +GVAN+HVSAHIDSSTRKLTMLYKVEP
Sbjct: 770  EVIKAPTLFATHFHELTALALENVSND-SQKQIVGVANYHVSAHIDSSTRKLTMLYKVEP 828

Query: 554  GACDQSFGIHVAEFANFPESVVALAREKAAELEDFSSISITSNDAKEEVGSKRKRVCGPD 375
            GACDQSFGIHVAEFANFPESVV LAREKAAELEDFS  + + N   +EVGSKRKR   PD
Sbjct: 829  GACDQSFGIHVAEFANFPESVVTLAREKAAELEDFSPSATSLNHTTQEVGSKRKRAFEPD 888

Query: 374  DISRGAARAHKFLQDFSSLPIDEMDLQQTLEHVSKLRNELVKDAADCCWLEQFL 213
            D+S+GAA+A +FL+ F +LP++ MD  Q L+ V KL + L KDA +C WL+QFL
Sbjct: 889  DMSQGAAKARQFLEAFVALPLETMDKMQALQEVKKLTDTLEKDAENCNWLQQFL 942