BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00017601
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   100   9e-20
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...    84   2e-14

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  100 bits (250), Expect = 9e-20
 Identities = 64/125 (51%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
 Frame = -2

Query: 359 APVKVENRFSPLCVEE----SLVAPIKSKITYADVVRAK--VSPAKAKKGVVTLIETSRD 198
           A VK  NRF+PL V+E    ++ API  K +YAD +R+   V P+  +KGVVTL+ET +D
Sbjct: 81  AAVKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSAFVKPS-VRKGVVTLVETEKD 139

Query: 197 FKLFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASP 27
           F LF D     + V  PGQT  EA +L REF KR L FSGRRL   GLP    +DPFASP
Sbjct: 140 FALFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--GSDPFASP 197

Query: 26  LPRGP 12
            P  P
Sbjct: 198 SPVRP 202


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 56/108 (51%), Positives = 67/108 (62%), Gaps = 9/108 (8%)
 Frame = -2

Query: 353 VKVENRFSPLCVEESL---VAPIK-SKITYADVVRAK--VSPAKAKKGVVTLIETSRDFK 192
           VK  NRF+ L V+E     VAP    K +YAD +R+   V P+ A+KGVVTL+ET +DF 
Sbjct: 83  VKTSNRFASLSVKEEAPEAVAPFNPKKKSYADALRSSAFVKPS-ARKGVVTLVETEKDFA 141

Query: 191 LFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPE 57
           LF D     + V  PGQT  EA SL REF KRA  FSG+RL   GLPE
Sbjct: 142 LFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPE 189